CI01000003_01889537_01891879


Basic Information

Item Value
gene id CI01000003_01889537_01891879
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1889498 ~ 1892071 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01889537_01891879.mRNA
GCTTAAAACAGCATGTCACTCGACCGTGCGTGTAGCAGAATGGCGTATGGGAAAATATGGGAAAAACTGTTCGTTATACTAAGTTTTTTCACATGCATTATTTTAATAGATTGCCTAAGTTTACTACAGTTATCTGGAACGCAAGAAGCAAAGGATGAAGAGAATAAAATTATGTCAGAACAATTCATGTCAGGCCACGAGGGATATGATGAGCTCTTGGCTGATGTTGAGTTCCTCGGTGACGACGCCAGTGTTGCAGAGCTGCAGAAGAAATCGATCATTAAAGGGCAACTAGTCAGTTCTTCTGAAGCAGCCTGGGATGCCATGTCTCCAAAGTTGAGGTGTGGTGACGATCTCCTGAAGTTGCAACTTAGTGGTCCAGAAGTAGCACAGGTTGAGCTTTGTCGAGTCCTAATCCCCTTTGTATGTAAATCACAGATAATGGTGCCCCTGTTTCTCTTGCTGCGTTGCCACCTCACTGTGGACGCACCTTTCCCACTTATGGAGGTCTTGTCTATGCTACACCTTATGATGGATGTGGTGTCATGCAACAGGTATTTCCCCCCCAATTTCCCCTATTGTGAGCATGGAATAAGCAGGACCAACCTGGATGTTCATGATGTTTTTCAGGGAGGGAGTTATGTGGTGCAGATTCAATGGCAGGGAAACTCTGCAGTCATTTCTTGTCCTGTGATCTCTACAAATGAAACTTTCTTTGGACATCATGATCCTGCGTATCTGCAGATTCTACTGCCTCACTCTCCTCCTGATACACTGAGTTCAGCAGCAGACACAATACCAGAACCATCTACACCTGAAACTGGTGAACAGCCCAAGCCCACATCCCAAGAAATGTTCAAACCTCATGGGTACCCTCAAGCATTTCCGCAAAGATTTTGGCCTTACTACTTCCCTCATTACCATTATCCTGGCAAGGTTTATCCCACAGCTAAGCCAACAGAGTCAATTGCCCAAGCACCAACCCAGAAGCCTCAACTTCCAGGATACCCCCAGATGTTTTGGCCATATTACTACCCTCACTATCATCATGGCAAACCAAAGCCCCCAGAGAAACCAGTTCCAACCTCTATCCCCACCACTACATCAATTGCCCAAGCACCAACCCAGAAGCCTCAACTTTCAGGATACCCCCAGATGTTTTGGCCATATTACTACCCTCATTACCATCATGGAAAACCAAAGCCCACAGAAAAACCAGTCCCAACCCCTCTCCCCACCACATCAGTTCCCCAAGCACCAGCCCAAGCACCAACCCAAAAGCCTCAACTTCCAGGATACCCCCAGATGTTTTGGCCATATTACTACCCTCATTACCATCATGGCAAACCAAAGCCCACAGAAAAACCAGTTCCAATCCCTCTCCCTACCACATCAGTTGCCCAAGCACCAACCCAGAAGCCTCATCTTCCAGGATACCCCCAGATGTTTTGGCCATATTACTACCCTTATTACCATCATGGCAAACAAAAGCCCACAGAAAAACCAGTTCCAATCCCTCTCCCTACCACATCAGTTGCCCAAGCACCAACCCAAAAGCCTCAACTTCCAGGATACCCCCAGATGTTTTGGCCATATTACTACCCTCATTACTATCATGGCAAACCAAAGCCCACAGAAAAACCAGTTTCAATCCCTCTCCCTACCACATCAGTTGCCCAAGCACCAACCCAGAAGCCTCAACTTCTAGGATACCCCCAGATGTTTTGGCCGTATTACTACCCTCATTACCATCATCATGGAAAACCAAAGCCCACAGAAAAACCAGTTCCAACCTCTATCCCTACCACATCATTTGCCCAAGCGCCGACCCAGAAGCCTCAACTTCCAGGATATCCCCAGGAGTTTTGGCCATATTACTACCCTCATTACAATCATGGCAAACCAAAGCCATTTTATCCGCAATACCCAGTGCAGCCTCCCAAAACCACTGCCACACCTCCAATAACTACCACCCCTCAACCTTGTACTACAACTGCAGCTGCTGAATGCAAACCATCAGCCAACCAGCCTCCCAATGAGCCACCCCATGTCTATATACCACCTATTTCTAAGCTTTATGAAAAAGACCCCTTTGCACTTCAATTTGTGGACTTGTCAGAGTCTGCTGACTCTTTCCCATGAAATTTTAATATGTAAAGACTGTGGACCTATTTAGATTTAGGTTGGTAATGTGCTGCACATGGTTTTGAAAGATTTCTTCCAGCTTTAATGCTAATATAGGCTGAGTGTATGTATGGAGTGACTGCAACGTGGTTCTTGCTCATAACATGCTGGTGTCTGCTTCATTCTGTCCCAGTTGTCTTTAACGATTCA

Function

NR:

description
adhesive plaque matrix protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01889537_01891879.mRNA True 2334 mRNA 0.46 3 1889498 1892071
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000003_01863421_01867859 NA coding upstream 21570 1862854 ~ 1868137 (+)
CI01000003_01797491_01803265 PTER coding upstream 85114 1796621 ~ 1806332 (+)
CI01000003_01728663_01761628 MMP16B, MMP16 coding upstream 127019 1728452 ~ 1762479 (+)
CI01000003_01561017_01590804 CABLES1 coding upstream 298575 1560913 ~ 1590923 (+)
CI01000003_01489211_01493471 GATA6 coding upstream 395473 1487837 ~ 1494025 (+)
CI01000003_01893593_01901539 SCHIP1 coding downstream 1522 1893593 ~ 1901769 (+)
CI01000003_01907347_01909263 NA coding downstream 15051 1907122 ~ 1909600 (+)
CI01000003_01921110_01928830 TXNDC12 coding downstream 28766 1920837 ~ 1929621 (+)
CI01000003_01956459_01966449 SLC25A24L coding downstream 64330 1956401 ~ 1966455 (+)
CI01000003_01969544_01973134 COPE coding downstream 77259 1969330 ~ 1973134 (+)
G23323 NA non-coding upstream 30284 1858488 ~ 1859214 (+)
G23322 NA non-coding upstream 31997 1855877 ~ 1857501 (+)
G23326 NA non-coding upstream 34330 1854305 ~ 1855168 (+)
G23346 NA non-coding upstream 37820 1851281 ~ 1851678 (+)
G23318 NA non-coding upstream 40429 1839845 ~ 1849069 (+)
G23379 NA non-coding downstream 61266 1953337 ~ 1953707 (+)
G23383 NA non-coding downstream 86958 1979029 ~ 1979593 (+)
G23356 NA non-coding downstream 137461 2029532 ~ 2047851 (+)
G23770 NA non-coding downstream 247217 2139288 ~ 2139544 (+)
G23771 NA non-coding downstream 247474 2139545 ~ 2139868 (+)
G22578 NA other upstream 964250 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 1494284 390622 ~ 408312 (+)
G22420 NA other upstream 1700059 179531 ~ 189439 (+)
G23870 NA other downstream 388589 2280660 ~ 2285641 (+)

Expression

CI01000003_01889537_01891879 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

CI01000003_01889537_01891879 Expression in each Bioproject

Bar chart with 20 bars.
CI01000003_01889537_01891879 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network