CI01000003_01893593_01901539 (SCHIP1)


Basic Information

Item Value
gene id CI01000003_01893593_01901539
gene name SCHIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1893593 ~ 1901769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01893593_01901539.mRNA
GCCCAGAGGAACGAGAGGGAGTCCATTAGGCAGAAGCTGGCCTTGGGCAGTTTCTATGACGACGGACCGGTTACCTTTACTGGCTGCAGCAAGAGCAGCAAAAACTGCCTGTCCTCACGGCTTCAGAATGGGGTGAATCTACAGATGTGCTTTGTGAATGACAGCAGCAGTGACAGGGACAGTGATGCAGAGGACAGCAGAACAGAGACCAGCCTGGACACCCCATTGTCACCTATGAGTAAACAGAGTTCATCTCTGTCTGACCGGGATACAGGAGAGGAAGACCTGGACACAGAGGATTCAGAATTCTGGCGGCTACAGCGGCGGCTGCAGGAGGAGGCGCGTGTGGCTCTAGCTTTGGCCCGTCCCATGGCCCGCATGCAGGTGGAGGTGGAGAGACAGATTCAGCTACACCGCAGGTCCCCCGTGGCAGACCTGCTTCCACATCTGCCACACATCAGTGAGAGCCTAATGAAGAGGAGTCTGAGGCCTGTGGACCTGAGGGACATGAGTCTTGGTCAATTACAGGTCATCACCAATGACCTGCACTCTCAAATTCAAGGTCTGAATGAGGAGCTGGTTCAGCTGTTGCTTATGAGAGATGAACTACACATGGAGCAGGATGCCATGCTGGTAGATGTGGAGGATCTAACCAGGCATGCACATAGCCAGCAGAGGCACATGATGGAGAAGTCTCTGGCAAAAGGCAAAGCAGTTTGTCACGGTCGCTGTGATTCTCCATTTTGAGGCAAACAGCACAGGGTCCGACCATTTGTGTTTCACTATATTATGAAGCAGTGTACTCGCTATAGATCCCTTTTTCAACTAAATGTGTGTTTTTGCCTATGTTAAGCTTTGTGTGGATGTATGTTAATTTTACATGCTGTAAGTGTTCATGCATGCCCGCACCTTAGCTGAGGGTTACACACTCACTTTTGAGAAAGTCCTGTTGATCCTTCATAATGTATAAACACAGA

Function

symbol description
schip1 Predicted to be involved in positive regulation of hippo signaling. Predicted to be active in cell junction and plasma membrane. Is expressed in basal plate midbrain region; central nervous system; notochord; and retinal ganglion cell layer. Orthologous to human SCHIP1 (schwannomin interacting protein 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01893593_01901539.mRNA True 977 mRNA 0.50 6 1893593 1901769
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000003_01889537_01891879 NA coding upstream 1522 1889498 ~ 1892071 (+)
CI01000003_01863421_01867859 NA coding upstream 25665 1862854 ~ 1868137 (+)
CI01000003_01797491_01803265 PTER coding upstream 89209 1796621 ~ 1806332 (+)
CI01000003_01728663_01761628 MMP16B, MMP16 coding upstream 131114 1728452 ~ 1762479 (+)
CI01000003_01561017_01590804 CABLES1 coding upstream 302670 1560913 ~ 1590923 (+)
CI01000003_01907347_01909263 NA coding downstream 5353 1907122 ~ 1909600 (+)
CI01000003_01921110_01928830 TXNDC12 coding downstream 19068 1920837 ~ 1929621 (+)
CI01000003_01956459_01966449 SLC25A24L coding downstream 54632 1956401 ~ 1966455 (+)
CI01000003_01969544_01973134 COPE coding downstream 67561 1969330 ~ 1973134 (+)
CI01000003_01982406_01992219 NA coding downstream 80567 1982336 ~ 1992844 (+)
G23323 NA non-coding upstream 34379 1858488 ~ 1859214 (+)
G23322 NA non-coding upstream 36092 1855877 ~ 1857501 (+)
G23326 NA non-coding upstream 38425 1854305 ~ 1855168 (+)
G23346 NA non-coding upstream 41915 1851281 ~ 1851678 (+)
G23318 NA non-coding upstream 44524 1839845 ~ 1849069 (+)
G23379 NA non-coding downstream 51568 1953337 ~ 1953707 (+)
G23383 NA non-coding downstream 77260 1979029 ~ 1979593 (+)
G23356 NA non-coding downstream 127763 2029532 ~ 2047851 (+)
G23770 NA non-coding downstream 237519 2139288 ~ 2139544 (+)
G23771 NA non-coding downstream 237776 2139545 ~ 2139868 (+)
G22578 NA other upstream 968345 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 1498379 390622 ~ 408312 (+)
G22420 NA other upstream 1704154 179531 ~ 189439 (+)
G23870 NA other downstream 378891 2280660 ~ 2285641 (+)

Expression

CI01000003_01893593_01901539(SCHIP1) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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CI01000003_01893593_01901539(SCHIP1) Expression in each Bioproject

Bar chart with 28 bars.
CI01000003_01893593_01901539(SCHIP1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016174 zgc:153615 coding NC_007113.7 CM002886.2 9629558 ~ 9646857 (-)