CI01000003_01921110_01928830 (TXNDC12)


Basic Information

Item Value
gene id CI01000003_01921110_01928830
gene name TXNDC12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1920837 ~ 1929621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01921110_01928830.mRNA
CTATAAATAGGCCTAATACTGTTAGCCTACTACTGTATTAATTCAATAGGCTATTTTAAAAACACAGGAATAATAGGCTAAATATAAGCCTATAATTCTGATCAAAGTTATCAGTAGATGGCAGTAATGCACTGCCCCATTGCAATAAACAGAAGAAGAAGAAGAAGCCATCAACGCTGTGAACGCGATCCTTTAATCCGGCAGTATTTAGGACCCAGCGGTTTCTATCCGTAATATCCAGGCAGCTCAAGGCTAACGACCATCGGAATGAAAATGCCGTCGTCTTTATTCAACATTACGCTGGTTTCATTTATACTGGTTTTTATTGCATCACATTTCGGGGATGTCTTAGCTGATGGCAATGGACGAGGATTTGGGGACCACATTCACTGGCGGAGCCTTGAAGATGGGAGGAAGGAGGCTGAAGCAAGTGGACTCCCTCTGATGGTCATTATTCACAAGACTTGGTGTGGCGCCTGTAAAGCACTAAAGCCCAAGTTTGCTGAATCGAAGGACATCTCTGAGTTGGCTCACAACTTTGTCATGATTAACTTGGAGGATGAAGAGGAGCCTAAAGATGAGGCCTTCAGCCCAGATGGTGGTTACATCCCTAGAATACTTTTTCTCGATCCCACTGGTAAAGTCCACTCTGAGATCACAAACAAGAATGGAAACCCTAACTACAAGTACTTCTACAGCAATGCAGATCAAGTTGTGGCTAGCATGAAGGAAGCTCAAGAGAAGCTGACTGGAGATGCCTTCAGGACTGCTCACGTTGGTGACGAACTCTAAGAAGGGCAGAAGTGGCATGGAAAGATCTCAGCCAGAACACTACATCACTCTGCTAGGCACACTAGATCCATCCATCCATCCATCCCCAACCTCAGCTCCTCCTGTGATTTCATTTGATCTACTATAGCACAAGACAAGCTTCAGAAATGAAGGAATTTATAATGCATCTACTGATTATATTTCAAGGTATCGCAGTTTGCGGTAGATTGGCTTATTACTTTGAGAACCAAAGCATACTTACTGTCCATGTCACATACAGGGTGCTAAAAGTTTTTTTTTTTTCGTCTTGCGTTTCAGAAATTCAAAGCTTACATGTCCATATTGATTATTCATGTTGACGATCAACCCTCTTGACTGCATTTTCAAGGCACTCCACATTTTGTCCGACTAAGAAACATTTAGCACACCACTAAGGCAATTCTTGTGCTTCCAAGCCATATCTTGCAAGCTGCGGTAAAACTGATTCAGTTACCCAGTCACATATATGAAGGGCCTTATAATCCCCAAACTGTACCCCCCCTAAAAACTAACATATGATTTGTTTTCATGAGTGTAAGAGATCTTTTATGTTAAGGCTATTAGAAATGTGAACAATGTCTCTTAAACTTGCCAAGTTTTAGTCCTCAATATATGGAGATGCCTTTGGTTTTAAAGGAGAGATTTTTACTATTGACAATACTTGTGATTTAAGGCCTGTAATGTAAACTGGCATTTTTTTTTTTTTGGGATTGAGAGGGAATTCTTTCTTCGCCATACTGTATTTTTTACCAATATGTAAAATGAGGCTACAA

Function

symbol description
txndc12 Enables protein-disulfide reductase (NAD(P)) activity. Acts upstream of or within DNA damage response, detection of DNA damage and detoxification of hydrogen peroxide. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; digestive system; immune system; pectoral fin bud; and ventricular zone. Orthologous to human TXNDC12 (thioredoxin domain containing 12).

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG:

id description
K05360 TXNDC12; protein-disulfide reductase (glutathione)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01921110_01928830.mRNA True 1583 mRNA 0.41 7 1920837 1929621
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Neighbor

gene id symbol gene type direction distance location
CI01000003_01907347_01909263 NA coding upstream 11237 1907122 ~ 1909600 (+)
CI01000003_01893593_01901539 SCHIP1 coding upstream 19068 1893593 ~ 1901769 (+)
CI01000003_01889537_01891879 NA coding upstream 28766 1889498 ~ 1892071 (+)
CI01000003_01863421_01867859 NA coding upstream 52909 1862854 ~ 1868137 (+)
CI01000003_01797491_01803265 PTER coding upstream 116453 1796621 ~ 1806332 (+)
CI01000003_01956459_01966449 SLC25A24L coding downstream 26780 1956401 ~ 1966455 (+)
CI01000003_01969544_01973134 COPE coding downstream 39709 1969330 ~ 1973134 (+)
CI01000003_01982406_01992219 NA coding downstream 52715 1982336 ~ 1992844 (+)
CI01000003_02070747_02072861 NA coding downstream 141126 2070747 ~ 2073389 (+)
CI01000003_02101903_02151773 NA coding downstream 171194 2100815 ~ 2151976 (+)
G23323 NA non-coding upstream 61623 1858488 ~ 1859214 (+)
G23322 NA non-coding upstream 63336 1855877 ~ 1857501 (+)
G23326 NA non-coding upstream 65669 1854305 ~ 1855168 (+)
G23346 NA non-coding upstream 69159 1851281 ~ 1851678 (+)
G23318 NA non-coding upstream 71768 1839845 ~ 1849069 (+)
G23379 NA non-coding downstream 23716 1953337 ~ 1953707 (+)
G23383 NA non-coding downstream 49408 1979029 ~ 1979593 (+)
G23356 NA non-coding downstream 99911 2029532 ~ 2047851 (+)
G23770 NA non-coding downstream 209667 2139288 ~ 2139544 (+)
G23771 NA non-coding downstream 209924 2139545 ~ 2139868 (+)
G22578 NA other upstream 995589 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 1525623 390622 ~ 408312 (+)
G22420 NA other upstream 1731398 179531 ~ 189439 (+)
G23870 NA other downstream 351039 2280660 ~ 2285641 (+)

Expression

CI01000003_01921110_01928830(TXNDC12) Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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CI01000003_01921110_01928830(TXNDC12) Expression in each Bioproject

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CI01000003_01921110_01928830(TXNDC12) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016172 txndc12 coding NC_007113.7 CM002886.2 9592319 ~ 9607879 (-)