Gene
RNA
| Item | Value |
|---|---|
| gene id | G22434 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 207583 ~ 207922 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU25296 | True | 340 | lncRNA | 0.31 | 1 | 207583 | 207922 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000003_00157111_00159800 | NA | coding | upstream | 47339 | 156863 ~ 160244 (+) |
| CI01000003_00011191_00013812 | NA | coding | upstream | 193685 | 11191 ~ 13898 (+) |
| CI01000003_00007611_00010967 | NA | coding | upstream | 196616 | 7611 ~ 10967 (+) |
| CI01000003_00266342_00275005 | NA | coding | downstream | 58420 | 266342 ~ 275312 (+) |
| CI01000003_00323130_00336023 | CLDN15LA | coding | downstream | 114945 | 322867 ~ 336168 (+) |
| CI01000003_00355244_00360638 | SAGA | coding | downstream | 147322 | 355244 ~ 360793 (+) |
| CI01000003_00380494_00385991 | PROC, PROCA | coding | downstream | 172572 | 380494 ~ 386091 (+) |
| CI01000003_00390997_00406970 | WDR33 | coding | downstream | 182975 | 390622 ~ 408312 (+) |
| G22433 | NA | non-coding | upstream | 311 | 206981 ~ 207272 (+) |
| G22432 | NA | non-coding | upstream | 897 | 206369 ~ 206686 (+) |
| G22394 | NA | non-coding | upstream | 47123 | 137893 ~ 160460 (+) |
| G22396 | NA | non-coding | upstream | 60878 | 145858 ~ 146705 (+) |
| G22339 | NA | non-coding | upstream | 170965 | 33154 ~ 36618 (+) |
| G22435 | NA | non-coding | downstream | 4260 | 212182 ~ 213447 (+) |
| G22436 | NA | non-coding | downstream | 6347 | 214269 ~ 214693 (+) |
| G22437 | NA | non-coding | downstream | 8690 | 216612 ~ 218340 (+) |
| G22438 | NA | non-coding | downstream | 11725 | 219647 ~ 219859 (+) |
| G22441 | NA | non-coding | downstream | 14091 | 222013 ~ 222783 (+) |
| G22420 | NA | other | upstream | 18144 | 179531 ~ 189439 (+) |
| G22578 | NA | other | downstream | 716881 | 924803 ~ 925248 (+) |
| CI01000003_01863421_01867859 | NA | other | downstream | 1655346 | 1862854 ~ 1868137 (+) |
| G23870 | NA | other | downstream | 2072738 | 2280660 ~ 2285641 (+) |
