G178501 (LOC107680816,LOC107569949,LOC107701362,LOC107570167,LOC107570168,LOC107738580)


Basic Information

Item Value
gene id G178501
gene name LOC107680816,LOC107569949,LOC107701362,LOC107570167,LOC107570168,LOC107738580
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 250318 ~ 252182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU264812
gtgtgtgtatgtatgtgtgtgtgtatgtgtctgtgtgtatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcaccCTGGGCCTCACTGGTTCTGGTCTCTGATTCTCAGGCATCTTCTCTTGAAGGCTGGCTCAGGATCTTCTTGTTCATTCGTCTCAGACCCCAGATCGATGTTTTTCTCCCAGCTTTGCGCTTGCGTGAccatcagtgtgtttttttcacgTAGTTTGGGCGGAACAGACCGTGCGTAGGTGTGCTCTACATCCTGTGCCGCTTGCTCCTCCCCCTCGCTCTCTTTCGATTGGTTGCTCCGGCAGTCCGTCTGCTCTGCCGGCCAGCGATTGGTCGAGTCGTCACCCCGCCCACCCAAGCAGCTGTTCTCCTTCACATCTTCACAATCTGAGAGAGGAGACGGAATCAGGGAGGAGCCAGCACTGTCCAACGAGAGCGAGGCGGCTTGTATGGCACTGGAACGGGCCAATGAGTACAAAGAGGCGGGACTGATAATCCTGGGTGAGACGGACGCGTAAAAAAGTGCTCTGTGCGTTGGagtttcttctttgtgttttcgGAGACACTGAATGACTTGTCGCTCCGAAGGAAGAGGAGAAGCACACGGCTCGTTTTTTACATCCTCCTCGGAGTGACCCGGATCGGGCGTGAGATCCTCTTCCTGCTCCGGAAGGCTTCGGATGACTCCGCGGTGGCCCGTTTGAGGGGGAATAGGGATGGGAATGGGAATGGGCACCGGGACTGGAATGAAAACTGGGTAGGGCGATAATATCATTGGCTGTGGCCAGGAAGGGGCCAAATGGGGTGGGTACGTGGGGAGGGGCATGTAGGGGCGGGGGCAAGGGTGGAGTAGAGGAGGGAACTAAAGGAAGGCCTCTGGATGGGGCTGAGGGGGCGGGGTGGTGGAGGGGCAGGGCTTCGTAGTGCAAAGGGGATGGGCCTTTGTGGTGGGCGTGGCTTCTCAGGAGAATGGGGCGGGGCACTGGTCTGAATCCTCGCTGAGACGGGCGTTTGGGGCGAGAGGGTTTGCGCTGGCCTGTCCCAAGCCTCCGGCGTCAAGAGTTTCTGGTTTTCCATGACAGCCGCTTTGGGGCGGGGCTCCTCATCCTTGTGGGCGGAGCCAGAGCTGGCGAGGGCAGCACGAGCTTCCTGGTAAAACACGTCCATCTTGTACTGGTTTAGACATTTGCTGCTGCAGAACTGCAGGCGCTCCTCGCCCGAACCGAAGTCCAGGTACTCTTTAGTGTGTCGCGCGTGTTTACACCAATCACACACCTGcagagatttttatttcaatggtCAAAAGCAAATTATCTTAGATCATGTAAAACAATTTGcaggtaatattgtgaaaattagttttgatatcaaatgttaatattttttattgtatcaaAGTTCAAAACtgcattataatgaataaaaaatttgaataaattctttaatgctaattcataataatgttaataaaacttcatgtttattatgcagTAACCATATTATCATGTAGTAAGCACAGCACACGGagactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagacagtgtgtg

Function

NR:

description
PREDICTED: sine oculis-binding protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264812 True 1605 lncRNA 0.52 2 250318 252182

Neighbor

gene id symbol gene type direction distance location
ost4 NA coding upstream 52204 197814 ~ 198114 (+)
mrps10 NA coding upstream 70936 177463 ~ 179382 (+)
phtf2 phtf2 coding upstream 156437 82433 ~ 93881 (+)
ripply2 NA coding downstream 58016 310198 ~ 311201 (+)
LOC122333200 grik2,LOC107574533,LOC107081635,LOC106535628,LOC108233439,LOC103457461,LOC102223640 coding downstream 99897 352079 ~ 389366 (+)
naga naga,LOC103380792 coding downstream 138770 390952 ~ 396784 (+)
rerg rerg,LOC107669035,LOC107662225 coding downstream 180791 432973 ~ 448981 (+)
LOC122333209 timp3,LOC107569206,LOC107572594 coding downstream 216913 469095 ~ 479393 (+)
G178450 NA non-coding upstream 4500 245092 ~ 245818 (+)
G178499 NA non-coding upstream 5397 243417 ~ 244921 (+)
G178437 dpysl5,dpysl5b non-coding upstream 9926 239917 ~ 240392 (+)
G178498 NA non-coding upstream 10455 239077 ~ 239863 (+)
G178435 dpysl5 non-coding upstream 17035 194699 ~ 233283 (+)
G178537 NA non-coding downstream 154329 406511 ~ 409812 (+)
G178549 NA non-coding downstream 177831 430013 ~ 432336 (+)
G178550 NA non-coding downstream 194827 447009 ~ 457680 (+)
G178557 LOC107662220 non-coding downstream 251029 503211 ~ 505537 (+)
LOC122333249 slc16a7,zgc:165507,LOC107698009,LOC107662218,LOC107568725 non-coding downstream 300945 553127 ~ 558473 (+)
cunh11orf98 lrp6,tmem214,LOC107569942,LOC107680820,LOC107701357,LOC107570162 other upstream 36043 100804 ~ 214275 (+)
G178503 NA other downstream 12335 264517 ~ 266728 (+)
G178541 NA other downstream 198944 451126 ~ 456354 (+)
LOC122333210 fam19a2,LOC107698008,LOC107662242,LOC107728758,LOC106576259 other downstream 272129 524311 ~ 538878 (+)
crebl2 crebl2,LOC107658994,LOC107707978 other downstream 523194 775376 ~ 778365 (+)
G178593 NA other downstream 584168 836350 ~ 838553 (+)

Expression


Co-expression Network