G178549


Basic Information

Item Value
gene id G178549
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 430013 ~ 432336 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU264873
GATGCTGGCGACGATGAGGCACGGCGATAAAACCCAGCGGAAGGCAGGACTCATGTTCGGTCGGGAATCGATCGGACTCTTTGATTCCCAGCGTCGCGCATCCGAACAATAGCGAGCGGATCGAAGGGCGAGCGGAGCGCGAACCGAGCCGAAGGGGAACGAGTGGAGCTTCCGCCGTCAGAAGCCGAGCGCCGCGTCCATCCGCCGGTTCCGTGCGCTCTCGGTCGGGTCTGTGGTTCGGCTCTGCGGGACGGGTGAATGATGGAGACCCACGGAGGCTCTAATGAAGCGCAGCAGCGGGTTTCTGTCTCTGCTCGCGTCTCAAAGTCTCCGGCGCTCCCTAACTAGGGCGCAGCGTTAGTGGGCGCCTCGTGCGCGTCTCCCCCGAAGCGCCTCGTGCGCCAGAGACGCCCAGACGCCGCGCACTATCTAGACGGCCGAGCGGGATTTGAGACGCGGCCCTGTGTCGCCCCGCCCTGAATCTCTGAACACAGACTGAATCTCATCACATGAACAAACCTGCTTTACATCATCCTCGTATCTTACCTCGTATCCTCACAGCAGACCCCGGGAAACACGGACAGTGTCGGAAAGACTGAAAGAAGGGTTCACGACTCACTGCGTTCAGTTAATACATGCcctgaaacaaataaacagGACAGACAGAGgaggagacagacagacagacagacagacagcaacAGAGGCGCTTTACAGCCGCCGGCCAATCAGCGTCCGGCCTCCCCGCCCCCTCGGACGagagctgctctctgattggcCGGCGAGCTTCACCGCGGTGATGGAATGTGGACAAAGGGTTTCCCTGATGAGCTCCAGTCACGTGATCTCTGGGATCAGGAGCTGCTAATCAGCTCCGCTGGAAACTAGATGCTACATGCTAATAAACACCGAGTGTGTTTTGCTGCTGTATTGTATATTAATGTGTGTATCTGTAGCAGCAGCTGCATTAAATCCGACTGGCGTCGGTCTCGTGTCGCCCTCTGGTGGTTCAATGAAAACGTGCTAAAAATGATCGTTGTGTCATCGTGTCGTTCAGAACccttcttctgtggaacactaAAGCTGATGTTTAGTACAATGTTCACGCTGCTTTTGTACGTAAAATGACAAGAACACTGTTAAATCACCTTGGATCATAATTAAGTTTCATTAGATCATCATAACACATgcgaattttattttattattattatatattattattttattttatttcaaatataaccAGAAGTATAGCAAAGTTCAGTAAGCCGAATgtgttcaaataataaaaataccagTTTGAAATATcgcgaagaaaaaaaagaataagcaAATGACACCGGAAGTCCTGCACACTCGCCGGCTCTGATTGGATGATGCGTTGCTTGATTAAAC

Function

GO: NA

KEGG:

id description
ko04713 Circadian entrainment

RNA

RNA id representative length rna type GC content exon number start site end site
TU264873 True 1398 lncRNA 0.51 2 430013 432336

Neighbor

gene id symbol gene type direction distance location
naga naga,LOC103380792 coding upstream 33229 390952 ~ 396784 (+)
LOC122333200 grik2,LOC107574533,LOC107081635,LOC106535628,LOC108233439,LOC103457461,LOC102223640 coding upstream 40647 352079 ~ 389366 (+)
ripply2 NA coding upstream 118812 310198 ~ 311201 (+)
ost4 NA coding upstream 231899 197814 ~ 198114 (+)
mrps10 NA coding upstream 250631 177463 ~ 179382 (+)
rerg rerg,LOC107669035,LOC107662225 coding downstream 637 432973 ~ 448981 (+)
LOC122333209 timp3,LOC107569206,LOC107572594 coding downstream 36759 469095 ~ 479393 (+)
etv6 etv6,LOC107698007 coding downstream 75066 507402 ~ 522540 (+)
lrig3 lrig3,LOC107710079,LOC107707969,LOC104942525 coding downstream 147456 579792 ~ 599671 (+)
echdc3 echdc3 coding downstream 181006 613342 ~ 616781 (+)
G178537 NA non-coding upstream 20201 406511 ~ 409812 (+)
G178434 NA non-coding upstream 117967 223356 ~ 312046 (+)
G178501 LOC107680816,LOC107569949,LOC107701362,LOC107570167,LOC107570168,LOC107738580 non-coding upstream 177831 250318 ~ 252182 (+)
G178450 NA non-coding upstream 184195 245092 ~ 245818 (+)
G178499 NA non-coding upstream 185092 243417 ~ 244921 (+)
G178550 NA non-coding downstream 14673 447009 ~ 457680 (+)
G178557 LOC107662220 non-coding downstream 70875 503211 ~ 505537 (+)
LOC122333249 slc16a7,zgc:165507,LOC107698009,LOC107662218,LOC107568725 non-coding downstream 120791 553127 ~ 558473 (+)
G178577 NA non-coding downstream 205342 637678 ~ 638126 (+)
G178589 LOC106593275 non-coding downstream 255102 687438 ~ 783476 (+)
G178503 NA other upstream 163285 264517 ~ 266728 (+)
cunh11orf98 lrp6,tmem214,LOC107569942,LOC107680820,LOC107701357,LOC107570162 other upstream 215738 100804 ~ 214275 (+)
G178541 NA other downstream 18790 451126 ~ 456354 (+)
LOC122333210 fam19a2,LOC107698008,LOC107662242,LOC107728758,LOC106576259 other downstream 91975 524311 ~ 538878 (+)
crebl2 crebl2,LOC107658994,LOC107707978 other downstream 343040 775376 ~ 778365 (+)
G178593 NA other downstream 404014 836350 ~ 838553 (+)

Expression


Co-expression Network