G178557 (LOC107662220)


Basic Information

Item Value
gene id G178557
gene name LOC107662220
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 503211 ~ 505537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU264891
TGTGTTGTTTTGTGGAGGTCTCTGAGCGTCCGGTCCTCTGCCGGCGTTGAATCCGCTCGAAGGTCTCCGGTTCTGTGCATTCGGGCCCCTCCTGGGGTTCGCTCCCGTGGCCTTGGAAAGACGCCTCAGGGCTTCGATGTTGGAGTACAGGTCCTTCATGGCGCCCATGAGTTCGGCCGGGACGCCTCTGTCCTGCAGGGTCTTCAGCGGATGCGGCTCGTAGAAGTCGTGCGAGCGAGTGCAGTCGCAGGATCCTCGCAGGTACCGCTCACAGATGTGGAGCCTCCTGCAGTTCTCTGCGTCCGGACAGCGGCCGTACTCTCCCGCGCCGTTATTATACGAGTAACACACCTGAGAGACGAGCACCGCTTTCAGACTCGACACAAAACTCTAGACTTCCTGTATAAGCTGTGACACACTCACCGCTGGCAGGAGAGAGTTATCGCTCTGCAGGAGTAGAACACACAGCTCCTTTACATCCAGTGCGTTCAGCCCGTGAGCGGTCAGGACTAATGCGTTCCCGTCGGAGAGCAGATTGTGACTGAAGCGGCATCCTCgtCCTTGTCGAAGCGGCAGGAACCGAACAGGAACCACTTGCACAGATGAAGATTGGAGCATCCGGAGCAGTTCTGGGCTCGACACAGACGGACTTTGGTTCTGGCGATCACTTTCTTCTGTCCGTTCACGACCGCCGCCACGACCGACTCGCTTCTACCGACGACCGAGTCCACGATGGTTTCGTCGTGCAGACCGAACGTCGATATTAAAGCGTCGTAATCCATAGATCCGTTGTTAGCGCAGAGCCGCTTCACGATCGCAGCCTCCATCGTGTCGAAGAGAATCGGTCCAGAGTCGAGTTTCTGGAGCGACGAGGAAGTAAAAGTGAT

Function

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 12-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264891 True 887 lncRNA 0.57 2 503211 505537

Neighbor

gene id symbol gene type direction distance location
LOC122333209 timp3,LOC107569206,LOC107572594 coding upstream 23818 469095 ~ 479393 (+)
rerg rerg,LOC107669035,LOC107662225 coding upstream 54230 432973 ~ 448981 (+)
naga naga,LOC103380792 coding upstream 106427 390952 ~ 396784 (+)
LOC122333200 grik2,LOC107574533,LOC107081635,LOC106535628,LOC108233439,LOC103457461,LOC102223640 coding upstream 113845 352079 ~ 389366 (+)
ripply2 NA coding upstream 192010 310198 ~ 311201 (+)
etv6 etv6,LOC107698007 coding downstream 1865 507402 ~ 522540 (+)
lrig3 lrig3,LOC107710079,LOC107707969,LOC104942525 coding downstream 74255 579792 ~ 599671 (+)
echdc3 echdc3 coding downstream 107805 613342 ~ 616781 (+)
rtcb rtcb coding downstream 117900 623437 ~ 631571 (+)
trnam-cau_120 NA coding downstream 294397 799934 ~ 800005 (+)
G178550 NA non-coding upstream 45531 447009 ~ 457680 (+)
G178549 NA non-coding upstream 70875 430013 ~ 432336 (+)
G178537 NA non-coding upstream 93399 406511 ~ 409812 (+)
G178501 LOC107680816,LOC107569949,LOC107701362,LOC107570167,LOC107570168,LOC107738580 non-coding upstream 251029 250318 ~ 252182 (+)
G178450 NA non-coding upstream 257393 245092 ~ 245818 (+)
LOC122333249 slc16a7,zgc:165507,LOC107698009,LOC107662218,LOC107568725 non-coding downstream 47590 553127 ~ 558473 (+)
G178577 NA non-coding downstream 132141 637678 ~ 638126 (+)
G178589 LOC106593275 non-coding downstream 181901 687438 ~ 783476 (+)
G178592 LOC107707972,LOC107561230,LOC107658995,LOC107710075,LOC107662214,LOC107568726 non-coding downstream 258021 763558 ~ 769697 (+)
G178617 NA non-coding downstream 293005 798542 ~ 799412 (+)
G178541 NA other upstream 46857 451126 ~ 456354 (+)
G178503 NA other upstream 236483 264517 ~ 266728 (+)
cunh11orf98 lrp6,tmem214,LOC107569942,LOC107680820,LOC107701357,LOC107570162 other upstream 288936 100804 ~ 214275 (+)
LOC122333210 fam19a2,LOC107698008,LOC107662242,LOC107728758,LOC106576259 other downstream 18774 524311 ~ 538878 (+)
crebl2 crebl2,LOC107658994,LOC107707978 other downstream 269839 775376 ~ 778365 (+)
G178593 NA other downstream 330813 836350 ~ 838553 (+)

Expression


Co-expression Network