sobpb (sobpb,LOC107701362,LOC107570168,LOC107738580,LOC107569949,LOC107680816)


Basic Information

Item Value
gene id sobpb
gene name sobpb,LOC107701362,LOC107570168,LOC107738580,LOC107569949,LOC107680816
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 245078 ~ 259665 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU265160
ctctctctctctctctctctctctctctctctctctctctctctctctctcactcttctcTATCCTCCAGAGAACTCCGTGTCCAAGTCTTCGTCGTCCTCCTCAGCGTGGTCTTCCTCGGAGCGGGGCCGGAGCAGTGAGGGCCCGGTGTCTCCTCTCAGTGTGAACGTGATCGTGCCGCTCATCAAACCCTCTGCCGcggAGGACGTCCAGAGCGTCCCGATCGTGTGTGTCTGGTGTCAGAAGGAGGGAGTGAAGAGATATTCTCTGCTCATGGGCTCCGAGCTCAAGAGCTTCTGCAGTGAGAAGTGTTTCGCCTCGTGCCGCCGAGCTTACTTCAAACGCAACAAGGCCCGAGATGAGGATCGTCATGGTGACCAGTCTCCGCCCCCTGGCCAGACACTGGACACGCCCACAAGACTTCTGCTGAAGATGAACAACAACACGCGTGTGTGTGATTGGTGTAAACACGCGCGACACACTAAAGAGTACCTGGACTTCGGTTCGGGCGAGGAGCGCCTGCAGTTCTGCAGCAGCAAATGTCTAAACCAGTACAAGATGGACGTGTTTTACCAGGAAGCTCGTGCTGCCCTCGCCAGCTCTGGCTCCGCCCACAAGGATGAGGAGCCCCGCCCCAAAGCGGCTGTCATGGAAAACCAGAAACTCTTGACGCCGGAGGCTTGGGACAGGCCAGCGCAAACCCTCTCGCCCCAAACGCCCGTCTCAGCGAGGATTCAGACCAGTGCCCCGCCCCATTCTCCTGAGAAGCCACGCCCACCACAAAGGCCCATCCCCTTTGCACTACGAAGCCCTGCCCCTCCACCACCCCGCCCCCTCAGCCCCATCCA
>XM_043230717.1
ATGGAGGGATATAAATCATGTTACATGCAGACCCTCATGAATCAAGTGACGTCACAAGGCCCTTTCGCAACTTTCAGCGCCCCATCGCCCTTCCCCCGAAGCGACGCCCCTCCCCTTAACGGTTTTTCGCGACGGTTTGAGGTCGGGGCCTGTGGGAGGGGCCGGAGGCTCCGGGCCCCGCCCCCTCCCCGGTCTCCTCGCCGCGTTCCCGCGCGCCGCGCCGCGAGTCCCAGCCGAGATGGAAGCGGAGCGTCCGGCGGAGAACAAGCGGAGCAGAAAACCCGCTCACCCCGTGAAGAGAGACGTGAGAGACGAGATGAAGAGAACTCCGTGTCCAAGTCTTCGTCGTCCTCCTCAGCGTGGTCTTCCTCGGAGCGGGGCCGGAGCAGTGAGGGCCCGGTGTCTCCTCTCAGTGTGAACGTGATCGTGCCGCTCATCAAACCCTCTGCCGcggAGGACGTCCAGAGCGTCCCGATCGTGTGTGTCTGGTGTCAGAAGGAGGGAGTGAAGAGATATTCTCTGCTCATGGGCTCCGAGCTCAAGAGCTTCTGCAGTGAGAAGTGTTTCGCCTCGTGCCGCCGAGCTTACTTCAAACGCAACAAGGCCCGAGATGAGGATCGTCATGGTGACCAGTCTCCGCCCCCTGGCCAGACACTGGACACGCCCACAAGACTTCTGCTGAAGATGAACAACAACACGCGTGTGTGTGATTGGTGTAAACACGCGCGACACACTAAAGAGTACCTGGACTTCGGTTCGGGCGAGGAGCGCCTGCAGTTCTGCAGCAGCAAATGTCTAAACCAGTACAAGATGGACGTGTTTTACCAGGAAGCTCGTGCTGCCCTCGCCAGCTCTGGCTCCGCCCACAAGGATGAGGAGCCCCGCCCCAAAGCGGCTGTCATGGAAAACCAGAAACTCTTGACGCCGGAGGCTTGGGACAGGCCAGCGCAAACCCTCTCGCCCCAAACGCCCGTCTCAGCGAGGATTCAGACCAGTGCCCCGCCCCATTCTCCTGAGAAGCCACGCCCACCACAAAGGCCCATCCCCTTTGCACTACGAAGCCCTGCCCCTCCACCACCCCGCCCCCTCAGCCCCATCCAGAGGCCTTCCTTTAGTCCTCCTCTACTCCACCCTTGCCCCCGCCCCTACATGCCCCTCCCCACGTACCCACCCCATTTGGCCCCTTCCTGGCCACAGCCAATGATATTATCGCCCTACCCAGTTTTCATTCCAGTCCCGGTGCCCATTCCCATTCCCATCCCTATTCCCCCTCAAACGGGCCACCGCGGAGTCATCCGAAGCCTTCCGGAGCAGGAAGAGGATCTCACGCCCGATCCGGGTCACTCCGAGGAGGATGTAAAAAACGAGCCGTGTGCTTCTCCTCTTCCTTCGGAGCGACAAGTCATTCAGTGTCTCcgaaaacacaaagaagaaactCCAACGCACAGAGCACTTTTTTACGCGTCCGTCTCACCCAGGATTATCAGTCCCGCCTCTTTGTACTCATTGGCCCGTTCCAGTGCCATACAAGCCGCCTCGCTCTCGTTGGACAGTGCTGGCTCCTCCCTGATTCCGTCTCCTCTCTCAGATTGTGAAGATGTGAAGGAGAACAGCTGCTTGGGTGGGCGGGGTGACGACTCGACCAATCGCTGGCCGGCAGAGCAGACGGACTGCCGGAGCAACCAATCGAAAGAGAGCGAGGGGGAGGAGCAAGCGGCACAGGATGTAGAGCACACCTACGCACGGTCTGTTCCGCCCAAACTAcgtgaaaaaaacacactgatggTCACGCAAGCGCAAAGCTGGGAGAAAAACATCGATCTGGGGTCTGAGACGAATGAACAAGAAGATCCTGAGCCAGCCTTCAAGAGAAGATGCCTGAGAATCAGAGACCAGAACCAGTGAGGCCCAGggtgtgtgtgaAGTGCTGAAGCGATCGAGTCGAGTGTTTCGACGGGTGATGCGGTGTGTGAACGCCTCACTGAAGCCCATCCAGACGCAGCATCCGCCCCAGAGCATCATGGGATTTAGAGATCAGGCGTGTGTGTGATCCAGTTAGaccgcatgtgtgtgtgtgtgtgttttcctgccACAGCTCTCTAAAGC

Function

symbol description
sobpb Predicted to enable metal ion binding activity. Orthologous to human SOBP (sine oculis binding protein homolog).

NR:

description
PREDICTED: sine oculis-binding protein homolog

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265160 False 848 TUCP 0.59 4 251477 254842
XM_043230717.1 True 2106 mRNA 0.59 8 245078 259665

Neighbor

gene id symbol gene type direction distance location
mapre3b mapre3b,mapre3,LOC107729016,LOC107701363,LOC107570175,LOC101073432 coding downstream 15108 223370 ~ 229970 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 22849 213214 ~ 222229 (-)
trnay-gua_46 NA coding downstream 32080 212911 ~ 212998 (-)
trnaa-agc_30 NA coding downstream 32835 212171 ~ 212243 (-)
agbl5 agbl5 coding downstream 33191 198129 ~ 211887 (-)
crybg1b NA coding upstream 13958 273623 ~ 299817 (-)
mrap2b NA coding upstream 43911 303576 ~ 309649 (-)
sim1b sim1,LOC106571165,LOC106528967,LOC103374615,LOC107716225,LOC102194905 coding upstream 58094 317759 ~ 329602 (-)
ptpro ptpro,LOC107662223,LOC107745277,LOC107669033,LOC107572592,LOC107569205,LOC107758139 coding upstream 138723 398388 ~ 430427 (-)
LOC122333205 syn3,LOC107662220,LOC107722345,LOC107758147,LOC107698006,LOC107575455,LOC107561234 coding upstream 196012 455677 ~ 505570 (-)
LOC122333180 NA non-coding downstream 198077 34201 ~ 47001 (-)
G178746 NA non-coding upstream 102302 361967 ~ 391304 (-)
LOC122333201 grik2,LOC107574533,LOC107758138,LOC108233439,LOC106535628,LOC107377647,LOC103044887,LOC108435120,LOC108279510,LOC103365520 non-coding upstream 122637 382302 ~ 389371 (-)
G178759 NA non-coding upstream 146850 406515 ~ 408166 (-)
G178742 NA non-coding upstream 218528 478193 ~ 480561 (-)
G178779 NA non-coding upstream 280394 540059 ~ 540286 (-)
dpysl5b dpysl5,dpysl5b other downstream 69 230412 ~ 245009 (-)
G178709 dpysl5,dpysl5b other downstream 9326 223349 ~ 235752 (-)
G178734 NA other upstream 47547 307212 ~ 336614 (-)
G178757 etv6,LOC107758141,LOC107698007 other upstream 198388 458053 ~ 520366 (-)
LOC122333240 LOC107707964,LOC107658786,LOC107561235,LOC107707096,LOC107662207,LOC107568705 other upstream 621793 881458 ~ 890779 (-)
mtpn mtpn,LOC106576424 other upstream 652239 911904 ~ 924260 (-)
G178856 NA other upstream 869534 1129199 ~ 1139105 (-)

Expression


Co-expression Network