sim1b (sim1,LOC106571165,LOC106528967,LOC103374615,LOC107716225,LOC102194905)


Basic Information

Item Value
gene id sim1b
gene name sim1,LOC106571165,LOC106528967,LOC103374615,LOC107716225,LOC102194905
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 317759 ~ 329602 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230716.1
TCTGACCAATGAGCGCGTGAGTGACGGTGAGACCGGACCGGTGTCCTACCCGGTGATGCGCGCGGAGtacaatagaatagaatagaatagaatagaatagaatagaatagaatagaatagaataatgGCAAGCCTGCGAATGCCGTGTAAGTCCTGATCCTGAACAAAAGGCGGGCCTGAGCTCGGTGACCGGCGAGATGAAGGAGAAGTCTAAGACGGCGGCGAGGACGCGGCGGGAGAAGGAGAACAGCGAGTTCTACGAGCTCGCCAAGATGCTGCCCTTACCGTCGGCCATCACCTCTCAGCTGGACAAAGCGTCCATCATCCGACTGACCAGCAGCTACCTGAAGATGAGGCTGGTGTTCCCTCAAGGTTTAGGGGAGGTTTGGGGTCGAAGCCGATCTCTAGAGAACACAAACCTTGAGCTCGGATCTCATTTACTGCAGGTAATAATCAGCAAGATGCTCCAGACGCTGGACGGCTTCATATTCGTGGTGGCTGCCGACGGGAAGATCATGTACATCTCTGAGACGGCGTCCGTTCATCTGGGCCTGTCGCAGGTAGAGCTGACCGGGAACAGTATTTACGAGTACGTGCACCCGGCCGATCACGAGGAGATGAGCGCCGTCCTGACCCCGCAGCCCTCGGTCCACTCACACCTCGTCCTCGAACATGAGGTAGAACGCTCCTTCTTCTTGAGAATGAAGTGTGTTTTGGCCAAACGTAACGCTGGGCTGATGAGCGGAGGAtataaaGTGATCCACTGCAGTGGCTATCTGAAGTCGTCGGTGCTGGAGGGCTGCTATCAGAGCGTGGGTCTGGTTGCCGTGGGACACACTTTACCTCCGAGCGCTGTCACCGAGATCAAGCTCCACAGCAACATGTTCATGTTCAGAGCCAGTCTAGACATGAAGCTCATCTTCCTGGACTCCAGGGTTTCAGAGCTGACAGGATATGAGCCACAGGACCTGATTGAGAAGACCCTGTATCATCACGTGCACAGCTGTGACAGTTTTCATCTGCGCTGTGCTCATCACCTCTTGCTGGTCAAAGGTCAGGTGACCACTAAATATTACCGCTTCCTGTCCAAACACGGCGGCTGGGTTTGGGTGCAGAGTTACGCCACGATCGTTCACAACAGTCGCTCGTCTCGGCCGCACTGCATCGTCAGCGTCAACTACGTCCTGACggacACGGAGTATAAAGGTCTGGCTCTGTCTCTGGAGCAGCTGAAGCCCAGCAGACCTGTGTTTCCGTACACAAACCACCCAGAGACCCCGAACAGAGCCCCGGCGCTCAAGATCCTGTCCCCGCCGTACCCTCAGCAGTTTTCGTTCTTCCAGCCCGAGCGCTCAGACTCTGAGCACGACAGCCAATGGGACGGCAGCCCTCAGACTGACTCCGCCTCCCCGCAGCGCCTGGACAcgtgtgctcacacacacacacacacacacgcgcgcagaGAGGGATGGTGGGATGCTCCTGGAGCTCCGGTCACTAAAGCAGCTCAGCCTGCTTGGGACGAGGAGGTGGAGGACGGATCTGATTCAGGAGACAGCTGTGGTGAGATCCGGGCGAGACAGGATCAGATCAAGCTGGAGGAGGGGTGTGTGAGCGAGTATTTCTCGTCCGTCTGCCGAGGACCGGCCCGTCTCGTCCTGCACCGAGACCTCAGAGACGCGAGTCCCGCTCTCAGCAGCCCCGGCTCGGACAGACTGACCGCTCTCATGCACTTTCAGAGCGGCGCCGGACACAACACCGCATCGGTCATCATCAGCAACGGCAGCTGACCGCACAACAGACCTGACGCTGCCTGAAAATCTCCTTCTAacttgtccaaatgaagtctgAGCAATGCTTATTACtcgttttgatatatttgcagCAGGAAATgtgctaaatatcttcatggaaccagatcttcacttaatatcctaatgatttttggtgtacaaatcaataataattttgtggACTGAGCTCTTAGGAGCGCTTCTGTGCTCAAATATAACATCCTTCTCACGCTGCTGTTTCTTCAGGCACTATATGAAGAGCACTAGATCAGATCACAAactaaaaaaggaagaaagtaTGTTTTGCACCGTGGCATTATTTAAGATTTGATGCAATTTGTTCAGTATGTATAGCTTCTGCTGTGCTGCTTTTAATTGGTTGATTTGatctatttatttgttcaaatatgATTTACAGTAGACTGTTTTATTTCCAGATCCAGAGCTAGTATTACCTTTTGTTtggtaattgaaataaaattcactatttgcaaaaaataagatcctaaaaaaataaaattgaagtACATTTTTGGTTTGAACCGtggcagtatttttttttttatcactttattttaatgcaaaatcaGTTATATTTTACTGGGTTTACACTGTAATGCCGTTGGTTGAGCTTCCTTTAGTTTGTTGGATCTTTTCAatcttttatatagttttaaagaGAATAATCACCGCTGCAGAAAATGCATGATATTCGTTTTTTTGCCGTTGCTTTGGTTGTGCTGATTTTTGGTTGATTTAgattgttacaaatatattttaattacagtaatctgaataaaataatacaagaaaatgaaaaaaaaattaatgcatgaAGAAAACTAGGTTTGCATTAGTGCAgagcattattttaatgtaaattcgACCCAATTCTCACTGTTTTGATccaaaatcaaatatatttatcattatttgcaTATCATAGTTGCATTGGTTTTATAAAATAAGTCTatcatttacagtaatataaaaacaaataatagctGCAGAGTGCTAAAGTTTTCATTCAGTTCTCCCCAAATCTCGTTATTCTGACGCAAAATCAATGATATGATTCGTTGCTGGCAGATTTGTTGGCATTTGTTGAGttgaatcaaataaaagtcTATAGAGAATATGAGGTGCATCACAGGAATGACTGACtgattcattttctttgtgcagAATATCATTCCTTGCGATGAAAAGCTGTGGTTTAAAGTCACCCGTGATATGATCAACGCTGTTCACTGAGACTGAAAGGAAGTTTTCTAGCAATTTAATAAATCCAAAAATGTGTGTA

Function

symbol description
sim1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and ureteric bud development. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in obesity.

NR:

description
PREDICTED: single-minded homolog 1-A-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K09100 SIM; single-minded

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230716.1 True 3096 mRNA 0.46 12 317759 329602

Neighbor

gene id symbol gene type direction distance location
mrap2b NA coding downstream 8110 303576 ~ 309649 (-)
crybg1b NA coding downstream 17942 273623 ~ 299817 (-)
mapre3b mapre3b,mapre3,LOC107729016,LOC107701363,LOC107570175,LOC101073432 coding downstream 87789 223370 ~ 229970 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding downstream 95530 213214 ~ 222229 (-)
trnay-gua_46 NA coding downstream 104761 212911 ~ 212998 (-)
ptpro ptpro,LOC107662223,LOC107745277,LOC107669033,LOC107572592,LOC107569205,LOC107758139 coding upstream 68786 398388 ~ 430427 (-)
LOC122333205 syn3,LOC107662220,LOC107722345,LOC107758147,LOC107698006,LOC107575455,LOC107561234 coding upstream 126075 455677 ~ 505570 (-)
zgc:165507 slc16a7,LOC107698009,LOC107662218,LOC107568725 coding upstream 224907 554509 ~ 569266 (-)
fbxo7 fbxo7,LOC107710073,LOC107707973,LOC107568699 coding upstream 287721 617323 ~ 622893 (-)
xpot xpot,LOC107662216,LOC107658760 coding upstream 301882 631484 ~ 645982 (-)
LOC122333180 NA non-coding downstream 270758 34201 ~ 47001 (-)
G178746 NA non-coding upstream 32365 361967 ~ 391304 (-)
LOC122333201 grik2,LOC107574533,LOC107758138,LOC108233439,LOC106535628,LOC107377647,LOC103044887,LOC108435120,LOC108279510,LOC103365520 non-coding upstream 52700 382302 ~ 389371 (-)
G178759 NA non-coding upstream 76913 406515 ~ 408166 (-)
G178742 NA non-coding upstream 148591 478193 ~ 480561 (-)
G178779 NA non-coding upstream 210457 540059 ~ 540286 (-)
sobpb sobpb,LOC107701362,LOC107570168,LOC107738580,LOC107569949,LOC107680816 other downstream 58094 245078 ~ 259665 (-)
dpysl5b dpysl5,dpysl5b other downstream 72750 230412 ~ 245009 (-)
G178709 dpysl5,dpysl5b other downstream 82007 223349 ~ 235752 (-)
G178757 etv6,LOC107758141,LOC107698007 other upstream 128451 458053 ~ 520366 (-)
LOC122333240 LOC107707964,LOC107658786,LOC107561235,LOC107707096,LOC107662207,LOC107568705 other upstream 551856 881458 ~ 890779 (-)
mtpn mtpn,LOC106576424 other upstream 582302 911904 ~ 924260 (-)
G178856 NA other upstream 799597 1129199 ~ 1139105 (-)
arid2 arid2,LOC107707985,LOC107658978,LOC107555896,LOC107707104,LOC107590507 other upstream 851086 1180688 ~ 1200891 (-)

Expression


Co-expression Network