tulp3 (zmp:0000000711,LOC107568721,LOC107707992,LOC107662194,LOC107658756)


Basic Information

Item Value
gene id tulp3
gene name zmp:0000000711,LOC107568721,LOC107707992,LOC107662194,LOC107658756
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1089815 ~ 1105373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230740.1
AGCGATCGTCATTTGACGCGCAGCCGTCTGCGCATGCGCCTGCGACCGCTGCGGGTTTTGCGCACGGGGACGCACGCGACGCGGCAGCAGCGGAGGAATCCATAGCAACGGCGGATAAACATGAGTTACTACAGCAGAGCCTCCAGTTCTTCCAGCTTCGCGTCCGCCGCCATGACAAGtACGCTGGAGGACGACAGTCTGAACCTCAGACAGCAGAAACTGGAGAAACAGAGGGCGCTGCTGGAGCAGAAGCAGCGGCGGAAGCGTCAGGAGCCTCTGATGGTTCAGCCCAACCCCGAGGGCCGTCCCCGGCGCTCCCGGCCCCGCCGCAGCGAGGAACACGCTCTCCTCGTGGAGCCGCACCTCAGCACCGCCAGCGACGTCATCCTCGACGgcatCGACGGCCCCGCGGCTCTGCTGGGTTCAGAGGCTCCGGATCTGGGCAGTAAGATCCAGGTTCTGTCGGTGTGTCCTCCTCCGCAGCCCTCGCCGCCGGCCGCAGAAGAGCCTGAGACTGACGCCGACACAGACACGCTGCTGGAGCCCAAAactgacatacacacactgcTGCAGAGACGCGgaCTGTCTGGCAGCATGAACTACGACGAGGCCAGCGAGGAAGACGACGATGAGTCTGAAGAGCGAAGCCGGTCGCTGTCACCGAACACCGAGAGCACGCGTCCTGCATCGGCCTCCAGCACCAAATCCACCACGGAGTGTCTCCCGGTGGGTTCTCCGTCGGCTGAGGGCTCCTGCATCGAGGTGGATAACCTGGAGGAGTTTGTTCTCCGTCCGGCTCCGAGGGGAGTCACCGTCAAGTGCCGCATCTCACGGGATAAGAAGGGCATGGACCGAGGCCTCTATCCCACCTACTTCATGCACCTGGAGAGAGAAGACGGCAAGAAGGTCCGATCTGATCCTTCACAATCACTTCTGACCGCTTTACCGCTCTCTCgctcatctgtctctctccctcaggTGTTCCTGTTGGCCGGACGCAAGAGGAAAAAGAGCAAAACATCCAACTATCTGATATCTGTAGACGCCACTGACCTGTCCCGTGAGGGCGAGAGCTTCATAGGGAAGCTGAGGTCCAATCTGATGGGAACCAAGTTTACTGTGTATGATAACGGCACGAACCCCTCGAAAACCCCCGGAGCGCTGCTGGAGGAGACCAACACTCGGCAGGAGCTCGCCGCTATCTGCTACgagaCCAACGTTCTGGGCTTCAAAGGGCCCCGGAAGATGACGGTGATCATTCCCGGCATGAACATGAACTTCGAGCGTGTTCCGGTCCGGcccgtgtgtgagcaGGAGTCTCTGCTGAGTAAATGGCAGAATCACTCTCTGGAGAATCTGATCGAGCTGCACAATAAAGCGCCGGTGTGGAACGACGACACGCAGTCCTACGTGCTCAACTTCCACGGCAGAGTCACGCAGGCCTCGGTCAAGAACTTCCAGATCGTCCACGACAACGACCCGGACTACATCGTGATGCAGTTCGGTCGGGTGGCAGAGGACATCTTCACTCTGGACTTTAACTACCCCATGTGTGCCCTGCAGGCCTTTGCTATCGGCCTGTCCAGCTTCGACAGCAAACTGGCCTGCGAGTGACcacgtgacacacacacacacacacacacacacacactcttcactcAGGACACTAAAGCACAGTCGTCCTCAGGAAGAGGATTTGTGCTGTATCACAATAATTAGAAACAAAAGGACcaaattaatagtttttttaaaggaagCACGTTGAATCGTTTAACCTTTGACTCCCTGGAATAACTGACACGACCGCCCTGCAGCTTCAAAAAGGGAGTTTATGCTTTAATGGAGCGATGGAAAAGAGACCGAGTAGTCTTCTGAAATGAGAgagattttatttagttttttaatgctgttttctgtgatgttctgtaagtgtctgatggcTTTGAAGAGTATGTTGTCATTAGGGTCAATCTCACACAAACTGGTAAACGCTTCCTGCTCAGAATTTTATTGAAGCCTGTTTCAGCCATGGGATATAAAAAAACTCGAAAGGTAATTGTGGCTCGGTTCTTGCACTCTTAagattatatttcacaattctggcTTTTGTTTAGACTGTATAACTCACAGTTCAGTGTTAttgtctcacaattctgagtttatatcatGCAGGTTTGCATTTATCTCACTTGCTTATGTCTCACATTCAGTGTTTATTTCGCAATACTAAGTTCATATCGCACAATTCTTATTATTTTGCACAGTTTAGAGTTTATATCTTGCGATTCTGATTCGATGTCTTACGAGTTGATCTCTCAGTGCTGCTTATAATTCGGTTTGTATCACAATTCTGTCTAAATTATGGGAAATCgtcacaattacttttttttttaaatccagagGAAACGAGCTTCCATAGACTTCTCCGCTGAAAGTAAAAGcattaagaaaatgaaacaaaaaaatcatgtaataGAGCAATTGAGAATTACAGTCAATGATCCAGATGCATTATGGTAGTGAAAGTTTTCATATCTAAAAACGTGCTTCATTTTCTTCAGGTACGGTGTagtttatttgatcttttttcttcctttttatttggatgatgttgatgtgttttttgCATTCTGCATGTTCAGATATGACCTTTTTAACACCACCTCCGGACGCATTGCATGTTGATTAGCGAGGCGAACCGCCGGGCTCTTTGTTAAGTGACGCACACTTCCCGCTGCATGGATGCTGAACGCGGCCTTAAAACATCACTGTAGTGTAAATGGTGCCTGACTGCTGGCTCGTAGAAGAGCGTCTGCATCCTGACAACCCGCAGGAAAAAAGGGAAGCTCAAGCACATCCGTTCCTGTTTAGTGTGTTTCCTATCGATATGATTGACGTGTGTGTTGATATTCATCATATGTTGTGTGTCTGTCAGCCAAGACtatattgatatatatgtatacatattaaaaaaaaaaaattttaaactaataacCTATTTGCACAAACTGTATTTCATGATGACACTGCTGGTAGaaatacagtaattaaaatccataaatatgaaaaaca
>XM_043230741.1
CGATCGTCATTTGACGCGCAGCCGTCTGCGCATGCGCCTGCGACCGCTGCGGGTTTTGCGCACGGGGACGCACGCGACGCGGCAGCAGCGGAGGAATCCATAGCAACGGCGGATAAACATGAGTTACTACAGCAGAGCCTCCAGTTCTTCCAGCTTCGCGTCCGCCGCCATGACAAGtACGCTGGAGGACGACAGTCTGAACCTCAGACAGCAGAAACTGGAGAAACAGAGGGCGCTGCTGGAGCAGAAGCAGCGGCGGAAGCGTCAGGAGCCTCTGATGGTTCAGCCCAACCCCGAGGGCCGTCCCCGGCGCTCCCGGCCCCGCCGCAGCGAGGAACACGCTCTCCTCGTGGAGCCGCACCTCAGCACCGCCAGCGACGTCATCCTCGACGgcatCGACGGCCCCGCGGCTCTGCTGGGTTCAGAGGCTCCGGATCTGGGCAGTAAGATCCAGGTTCTGTCGGTGTGTCCTCCTCCGCAGCCCTCGCCGCCGGCCGCAGAAGAGCCTGAGACTGACGCCGACACAGACACGCTGCTGGAGCCCAAAactgacatacacacactgcTGCAGAGACGCGgaCTGTCTGGCAGCATGAACTACGACGAGGCCAGCGAGGAAGACGACGATGAGTCTGAAGAGCGAAGCCGGTCGCTGTCACCGAACACCGAGAGCACGCGTCCTGCATCGGCCTCCAGCACCAAATCCACCACGGAGTGTCTCCCGGTGGGTTCTCCGTCGGCTGAGGGCTCCTGCATCGAGGTGGATAACCTGGAGGAGTTTGTTCTCCGTCCGGCTCCGAGGGGAGTCACCGTCAAGTGCCGCATCTCACGGGATAAGAAGGGCATGGACCGAGGCCTCTATCCCACCTACTTCATGCACCTGGAGAGAGAAGACGGCAAGAAGgTGTTCCTGTTGGCCGGACGCAAGAGGAAAAAGAGCAAAACATCCAACTATCTGATATCTGTAGACGCCACTGACCTGTCCCGTGAGGGCGAGAGCTTCATAGGGAAGCTGAGGTCCAATCTGATGGGAACCAAGTTTACTGTGTATGATAACGGCACGAACCCCTCGAAAACCCCCGGAGCGCTGCTGGAGGAGACCAACACTCGGCAGGAGCTCGCCGCTATCTGCTACgagaCCAACGTTCTGGGCTTCAAAGGGCCCCGGAAGATGACGGTGATCATTCCCGGCATGAACATGAACTTCGAGCGTGTTCCGGTCCGGcccgtgtgtgagcaGGAGTCTCTGCTGAGTAAATGGCAGAATCACTCTCTGGAGAATCTGATCGAGCTGCACAATAAAGCGCCGGTGTGGAACGACGACACGCAGTCCTACGTGCTCAACTTCCACGGCAGAGTCACGCAGGCCTCGGTCAAGAACTTCCAGATCGTCCACGACAACGACCCGGACTACATCGTGATGCAGTTCGGTCGGGTGGCAGAGGACATCTTCACTCTGGACTTTAACTACCCCATGTGTGCCCTGCAGGCCTTTGCTATCGGCCTGTCCAGCTTCGACAGCAAACTGGCCTGCGAGTGACcacgtgacacacacacacacacacacacacacacactcttcactcAGGACACTAAAGCACAGTCGTCCTCAGGAAGAGGATTTGTGCTGTATCACAATAATTAGAAACAAAAGGACcaaattaatagtttttttaaaggaagCACGTTGAATCGTTTAACCTTTGACTCCCTGGAATAACTGACACGACCGCCCTGCAGCTTCAAAAAGGGAGTTTATGCTTTAATGGAGCGATGGAAAAGAGACCGAGTAGTCTTCTGAAATGAGAgagattttatttagttttttaatgctgttttctgtgatgttctgtaagtgtctgatggcTTTGAAGAGTATGTTGTCATTAGGGTCAATCTCACACAAACTGGTAAACGCTTCCTGCTCAGAATTTTATTGAAGCCTGTTTCAGCCATGGGATATAAAAAAACTCGAAAGGTAATTGTGGCTCGGTTCTTGCACTCTTAagattatatttcacaattctggcTTTTGTTTAGACTGTATAACTCACAGTTCAGTGTTAttgtctcacaattctgagtttatatcatGCAGGTTTGCATTTATCTCACTTGCTTATGTCTCACATTCAGTGTTTATTTCGCAATACTAAGTTCATATCGCACAATTCTTATTATTTTGCACAGTTTAGAGTTTATATCTTGCGATTCTGATTCGATGTCTTACGAGTTGATCTCTCAGTGCTGCTTATAATTCGGTTTGTATCACAATTCTGTCTAAATTATGGGAAATCgtcacaattacttttttttttaaatccagagGAAACGAGCTTCCATAGACTTCTCCGCTGAAAGTAAAAGcattaagaaaatgaaacaaaaaaatcatgtaataGAGCAATTGAGAATTACAGTCAATGATCCAGATGCATTATGGTAGTGAAAGTTTTCATATCTAAAAACGTGCTTCATTTTCTTCAGGTACGGTGTagtttatttgatcttttttcttcctttttatttggatgatgttgatgtgttttttgCATTCTGCATGTTCAGATATGACCTTTTTAACACCACCTCCGGACGCATTGCATGTTGATTAGCGAGGCGAACCGCCGGGCTCTTTGTTAAGTGACGCACACTTCCCGCTGCATGGATGCTGAACGCGGCCTTAAAACATCACTGTAGTGTAAATGGTGCCTGACTGCTGGCTCGTAGAAGAGCGTCTGCATCCTGACAACCCGCAGGAAAAAAGGGAAGCTCAAGCACATCCGTTCCTGTTTAGTGTGTTTCCTATCGATATGATTGACGTGTGTGTTGATATTCATCATATGTTGTGTGTCTGTCAGCCAAGACtatattgatatatatgtatacatattaaaaaaaaaaaattttaaactaataacCTATTTGCACAAACTGTATTTCATGATGACACTGCTGGTAGaaatacagtaattaaaatccataaatatgaaaaaca

Function

symbol description
zmp:0000000711 Predicted to be located in extracellular region. Orthologous to human TULP3 (TUB like protein 3).

NR:

description
tubby-related protein 3-like isoform X1

GO: NA

KEGG:

id description
K19600 TUB, TULP; tubby and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230740.1 True 3072 mRNA 0.49 11 1089815 1105373
XM_043230741.1 False 2998 mRNA 0.49 12 1089815 1105371

Neighbor

gene id symbol gene type direction distance location
ptn ptn,LOC107561243,LOC107707095,LOC107662199,LOC107708001 coding downstream 19372 1043383 ~ 1070443 (-)
upf2 upf2,LOC107662208 coding downstream 208790 860592 ~ 881025 (-)
rpap3 rpap3,LOC107568714 coding downstream 245765 836294 ~ 844050 (-)
tbk1 tbk1,LOC107707971,LOC107561249,LOC107710078,LOC107568716 coding downstream 290298 786810 ~ 799517 (-)
gpr19 gpr19,LOC107658992,LOC107707975,LOC107710070,LOC107662212,LOC107568715 coding downstream 304866 779188 ~ 784949 (-)
gas2l3 gas2l3,LOC107707103,LOC107707988,LOC107662189,LOC107658977 coding upstream 98343 1203716 ~ 1220286 (-)
tm7sf3 tm7sf3,LOC107658975,LOC107707989,LOC107555894,LOC107662191,LOC107590509,LOC107707089 coding upstream 118781 1224154 ~ 1233213 (-)
dnajc2 dnajc2,LOC107658974,LOC107590541,LOC107707995 coding upstream 136577 1241950 ~ 1249814 (-)
nudt4b nudt4b,LOC107555891,LOC107662198,LOC107708005,LOC107576967,LOC101067274,LOC103028168,LOC108275142,LOC108438514 coding upstream 147078 1252451 ~ 1260257 (-)
ube2nb ube2nb,ube2na,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding upstream 158200 1263573 ~ 1266697 (-)
G178853 NA non-coding downstream 44370 1044382 ~ 1045445 (-)
LOC122333259 NA non-coding downstream 67652 959497 ~ 1022163 (-)
G178791 LOC107658990 non-coding downstream 143292 856479 ~ 946523 (-)
G178828 NA non-coding downstream 256072 831337 ~ 833743 (-)
G178782 NA non-coding downstream 536291 553100 ~ 553524 (-)
G178862 NA non-coding upstream 22415 1127788 ~ 1128698 (-)
G178868 NA non-coding upstream 56914 1162287 ~ 1162846 (-)
G178876 NA non-coding upstream 70506 1175879 ~ 1176615 (-)
G178884 pmpcb,LOC107658973,LOC107590511 non-coding upstream 132020 1237393 ~ 1237952 (-)
mtpn mtpn,LOC106576424 other downstream 165555 911904 ~ 924260 (-)
LOC122333240 LOC107707964,LOC107658786,LOC107561235,LOC107707096,LOC107662207,LOC107568705 other downstream 199036 881458 ~ 890779 (-)
G178757 etv6,LOC107758141,LOC107698007 other downstream 569449 458053 ~ 520366 (-)
G178734 NA other downstream 753201 307212 ~ 336614 (-)
sobpb sobpb,LOC107701362,LOC107570168,LOC107738580,LOC107569949,LOC107680816 other downstream 830150 245078 ~ 259665 (-)
G178856 NA other upstream 23826 1129199 ~ 1139105 (-)
arid2 arid2,LOC107707985,LOC107658978,LOC107555896,LOC107707104,LOC107590507 other upstream 75315 1180688 ~ 1200891 (-)

Expression


Co-expression Network