LOC122333216


Basic Information

Item Value
gene id LOC122333216
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 1083394 ~ 1086227 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230743.1
TAGTAAAACGAAAGTTAATGGACTGAAATGAAAGGGTGGACTGTGGGAGAAAGATAAAGCAGGTTTCGTAATATATCTCCAAAAGTAGTCCAAAGTCCTGTTAACAgcgttttaaatgtaaagaccGCCTGTTTCTTTACAGTCGCTGTCAGTGTTTCTACTGAGAACTGACTTCAGTCATGATGGACACTTTGGCCTTCCTGGAAGAGGACTTGACCTGTCTCATCTGCTGTGATATCTTCACCGAGCCCGTCACTCTGAAATGTGGCCACAGTTTGTGTGAGGAATGTCTCAGGATTTTCTGGACGACTCAAGACGCGCCGCAGTGTCCGGTCTGTCGCAAGACATGCTCTCAAGACGAGCCGACCAAGAGCCTGGTTTTAAGAGGTCTCTGTGAGTCCTTCAAGAAGAGAAAACTCACAGCTGTTTTATCCGGAGATGTTTGTCCAGAACATAAAGAGGCTCTCAAACTCTTCTGCCTCGACGACCAGCAGCCCATCTGCGTGGTCTGCTACACATCAAAGAAGCATGAAAATCACAAGTGTTCTCCTGTGGACGAGGCTGCTGGGAATTTAAAGGAGGATCTGAAGATGCAGATGGACAGGTATCAGGCAACGCTCGCTGATCTCAAGAAAGCCCATGAGAGCTGTGTGAAACAGACTGGGCTCAATAAGGAACATGCCAGCATGACAGAAAACCAAATTAAGAAGGAATTTGAGAAGCTCCATCGGTTTCTTAGAGATGAGGAAGAGAAACACATCAGATCCTTTCGTGGAGAAATGGAACCGCAAGATGAGAAACTCAAGTCTGTAATGAAGGAGCTGTCCAAACAGATTTCAGATCTGTCTGAGAATATGGCAGCCATCTGGCAAGATATAGAAGCTGAAAATATCACATTTCTCCAGAATTACAGCAATACATTAAAAAGGTTCCAGCACCCATCAGTGCCAAACACAACCCCTCTACTACAAGAATATGAGCGCTATCCCACTCAGACAGTGATCTTTACCACCTGGGCCAGAATGCAGAACCTTGTTGAACAACTAATCTGTGTTTCATCTCCTGTGACTCTGGATCCAGACACAGCATCCAATAAACTCCTGGTGTCAGAGGATTGCACCAGTGTTCAGTACGTGGAAATGAAACTGGACGTGTCTGATAACCCAGAAAGGCTGTATGGGGGAGTGCTGGCCTCACAGGGCTTCAGCTCAGGTCTGCACTGCTGGGACGTAGAAGTGGGTGATAACAACAACTGGACGCTGGGAGTGATGGGAGAAAAAGTGAACCGCAAAAAACTTTGCAAAATGGATCCAAAAAATAGTTTCTGGTGTTTTCGTAATGTAGATGGTATATACAAGAAAGGAACAAAAAAGGTCAGCGATATTGATGGCAATGAGAGGCCGAATATCATCCGACTGCAGCTGGACTTTAGCGAAGGAGAACTGAGATTCATCGACCCTTTCAGGAACAAAATTTTGTGCAACTACACAGGAGGATTTACAGAAAAGGTGTTCCCTTATTTCTGTACCAAAGATAAGGACAAACCACTGAGTCTTTTCCcagaaaacaaactaaaccaaaactaacaggacatttattttttacgcaTGATGAATGTTGAACACTACTGACCGGCTTAATGTTAacatttgtcctttttttattttaaacaaaaagctaTAAATTGAGTATTGCTTAAGTGTCCAAATTCTTTTTTGAGGCCACTGTATGTGATTATTTAATGATGCAGTGTTTCAGTAAAAATGATAAGGCAGATCTATGTAGAACACAATAGAGTTTGGTGTACAAATGTGATATTACTGAATTTCAAGTGAAACGCATTGTTGTGGCACGGGCACAACGTACCTcactttttcttgcagttctaAGTTTatattctgaggaaaaaaagcacatattgtgggataaaaactcaaaattgtgagataaaaagccaTGGCTGAAATAATGACtcataattctgagaaaaacagTCATGATTGGGATAATACAggcaaaactaataaaaaaaaagaaaagaaaa

Function

GO: NA

KEGG:

id description
K10650 TRIM11; tripartite motif-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230743.1 True 2044 mRNA 0.42 6 1083394 1086227

Neighbor

gene id symbol gene type direction distance location
chrm2a chrm2a,LOC107561244,LOC107658987,LOC107707993,LOC107568718,LOC107662193,LOC108427087 coding upstream 46212 967053 ~ 1037182 (+)
LOC122333207 NA coding upstream 150530 931241 ~ 932864 (+)
LOC122333262 NA coding upstream 223651 851301 ~ 859743 (+)
atp23 atp23,xrcc6bp1,LOC106576246,LOC106609469 coding upstream 235472 844355 ~ 847922 (+)
eps8a LOC107561250,LOC107568712,LOC107707945 coding upstream 248080 801545 ~ 835314 (+)
LOC122333217 LOC107707997 coding downstream 545 1086772 ~ 1089265 (+)
slc38a4 slc38a4,LOC107658982,LOC107662190,LOC107707107,LOC107555871,LOC107590506,LOC108411501 coding downstream 28505 1114732 ~ 1139102 (+)
slc38a2 LOC107707990,LOC107658981,LOC107662192,LOC107590504 coding downstream 69237 1155464 ~ 1165727 (+)
scaf11 scaf11,LOC107707986,LOC107658980 coding downstream 80467 1166694 ~ 1176617 (+)
fgfr1op2 fgfr1op2,LOC107707999,LOC107658785,LOC107555877,LOC107662197,LOC107590508,LOC107707094 coding downstream 134883 1221110 ~ 1223747 (+)
G178590 NA non-coding upstream 12499 1001558 ~ 1070895 (+)
LOC122333252 upf2,LOC107707109,LOC107568704,LOC107662208 non-coding upstream 82155 854794 ~ 1001239 (+)
G178639 NA non-coding upstream 134487 946107 ~ 948907 (+)
G178633 NA non-coding upstream 159569 918789 ~ 923825 (+)
G178621 NA non-coding upstream 172799 845425 ~ 910595 (+)
G178664 NA non-coding downstream 56067 1142294 ~ 1142530 (+)
G178666 NA non-coding downstream 65049 1151276 ~ 1151551 (+)
G178670 NA non-coding downstream 94467 1180694 ~ 1182218 (+)
G178699 NA non-coding downstream 159945 1246172 ~ 1247077 (+)
G178593 NA other upstream 244841 836350 ~ 838553 (+)
crebl2 crebl2,LOC107658994,LOC107707978 other upstream 305029 775376 ~ 778365 (+)
LOC122333210 fam19a2,LOC107698008,LOC107662242,LOC107728758,LOC106576259 other upstream 544516 524311 ~ 538878 (+)
G178541 NA other upstream 627040 451126 ~ 456354 (+)
G178503 NA other upstream 816666 264517 ~ 266728 (+)

Expression


Co-expression Network