rtcb (rtcb)


Basic Information

Item Value
gene id rtcb
gene name rtcb
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 623437 ~ 631571 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230748.1
ACATAAAGATCGAGAAGAAGAGCGGTATTCCGGCAAGCGTGTGAATATAGCTCGCTGTCAAAAGTGCGTCTATtacttctattttaaaatgagtcgCACTTACAATGATGAGCTTCAGTACCTGGATAAAATCCACAAGAACTGCTGGAGGATCAAGAAGGGCTTCGTGCCGAACATGCAGGTGGAAGGTGTTTTCTATGTGAACGATCCTCTGGAGAAACTCATGTTTGAGGAGCTGAGAAACGCCTGTCGAGGTGGAGgGTTTGGTGGTTTCTTGCCTGCTATGAAGCAGATTGGAAACGTTGCCGCTCTGCCGGGAATCATACACCGCTCCATCGGTTTACCAGACGTCCACTCCGGGTACGGCTTCGCTATCGGGAACATGGCAGCGTTTGACATGGACGAGGCCGAGGCCGTGGTGTCTCCCGGCGGCGTGGGCTTCGACATTAACTGTGGCGTCCGTCTCCTGAGGACCAACCTGGACGAGGGAGACGTCCAGCCGGTCAAAGAGCAGCTGGCTCAGTCCATGTTTGACCACATTCCCGTCGGAGTCGGATCCAAGGGCGTCATTCCCATGGGAGCCAAAGATCTGGAGGAGGCTCTGGAGATGGGGGTGGACTGGTCTCTGAGGGAAGGGTACGCCTGGGCCGAAGACAAGGAGCACTGCGAGGAATACGGCCGCATGCTGCAGGCCGACCCCAACAAAGTGTCGTCCAAAGCCAAGAAGAGAGGCCTGCCTCAGCTGGGGACGCTGGGCGCTGGAAATCACTACGCCGAGATCCAGGTGGTGGACGAGATCTACAACGATTACGCTGCTAAGAAGATGGGCATCGACCACAAGGGTCAGATCTGTGTGATGATCCACAGCGGCAGCAGAGGCCTCGGGCACCAGGTGGCCACCGatGCTCTGGTTGCGATGGAGAAGGCGATGAAGCGGGATAAGATCACGGTGAATGACCGTCAGTTGGCCTGCGCTCGTATCACGTCTCCTGAGGGTCAGGACTATCTGAAGGGCATGGCAGCGGCCGGCAACTACGCCTGGGTCAACCGCTCGTCCATGACCTTCCTCACCCGCCAGGCCTTCTCCAAGGTCTTCAACACCACCCCGGACGATCTGGACATGCACGTCATCTACGACGTCTCGCACAACATCGCCAAGGTGGAGGAGCACATGGTGGAGGGCAAACAGAAGACGCTCCTCGTGCACAGGAAGGGGTCGACCCGAGCGTTCCCGCCTCACCATCCGCTCATACCCGTCGACTATCAGCTGACCGGCCAGCCCGTTCTGATCGGAGGAACCATGGGCACCTGCAGTTACGTGCTGACGGGCACCGAGCAGGGCATGACGGAGACGTTCGGCACCACGTGTCACGGAGCGGGCCGGGCTCTGTCCAGAGCCAAATCCAGACGCAACCTGGACTTCCAGGACGTTCTGGATAAACTGGCAGACAAGGGCATCGCTATCAGAGTGGCGTCACCAAAGCTGGTGATGGAGGAGGCTCCTGAATCCTACAAGAACGTCACGGATGTGGTGAACACGTGCCACGACGCCGGCATCAGCAAGAAGGCCATCAAGCTCAGACCGATCGCCGTGATTAAAGGCTGAAACCTCAAGAAGCTGCACGTTTCTCAAATATTTAGCACTTAATGGTGACGTGGCTCAGGCATTACTTGTGTTTGGTTTTGGGTTGGAGGGTGAACGTTTACAGCAAGAGCTACTGAAGTGGAATAAAAGCATTGCATCGGTGCCTCTGCTTGTTCTCCTCAATGTGCACGAGTTCACGAACGTGGCCGCTTTAAATAAACCTAAAGCTGGAAATCAGACGGAGATTAGTAAACACTTTATTGGTCATGACAAAAGGGAGTGAGAGGGCCTGTCCCaacatatcaaaaataaatcaagtttGCAGTCTA

Function

symbol description
rtcb Predicted to enable RNA ligase (ATP) activity. Predicted to be involved in tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be part of tRNA-splicing ligase complex. Predicted to be active in nucleus. Orthologous to human RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase).

NR:

description
PREDICTED: tRNA-splicing ligase RtcB homolog

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0072669 tRNA-splicing ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003972 RNA ligase (ATP) activity molecular_function

KEGG:

id description
K14415 RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230748.1 True 1914 mRNA 0.55 12 623437 631571

Neighbor

gene id symbol gene type direction distance location
echdc3 echdc3 coding upstream 6656 613342 ~ 616781 (+)
lrig3 lrig3,LOC107710079,LOC107707969,LOC104942525 coding upstream 23766 579792 ~ 599671 (+)
etv6 etv6,LOC107698007 coding upstream 100897 507402 ~ 522540 (+)
LOC122333209 timp3,LOC107569206,LOC107572594 coding upstream 144044 469095 ~ 479393 (+)
rerg rerg,LOC107669035,LOC107662225 coding upstream 174456 432973 ~ 448981 (+)
trnam-cau_120 NA coding downstream 168363 799934 ~ 800005 (+)
eps8a LOC107561250,LOC107568712,LOC107707945 coding downstream 169974 801545 ~ 835314 (+)
atp23 atp23,xrcc6bp1,LOC106576246,LOC106609469 coding downstream 212784 844355 ~ 847922 (+)
LOC122333262 NA coding downstream 219730 851301 ~ 859743 (+)
LOC122333207 NA coding downstream 299670 931241 ~ 932864 (+)
LOC122333249 slc16a7,zgc:165507,LOC107698009,LOC107662218,LOC107568725 non-coding upstream 64964 553127 ~ 558473 (+)
G178557 LOC107662220 non-coding upstream 117900 503211 ~ 505537 (+)
G178550 NA non-coding upstream 165757 447009 ~ 457680 (+)
G178549 NA non-coding upstream 191101 430013 ~ 432336 (+)
G178537 NA non-coding upstream 213625 406511 ~ 409812 (+)
G178577 NA non-coding downstream 6107 637678 ~ 638126 (+)
G178589 LOC106593275 non-coding downstream 55867 687438 ~ 783476 (+)
G178592 LOC107707972,LOC107561230,LOC107658995,LOC107710075,LOC107662214,LOC107568726 non-coding downstream 131987 763558 ~ 769697 (+)
G178617 NA non-coding downstream 166971 798542 ~ 799412 (+)
G178619 NA non-coding downstream 211265 842836 ~ 843975 (+)
LOC122333210 fam19a2,LOC107698008,LOC107662242,LOC107728758,LOC106576259 other upstream 84559 524311 ~ 538878 (+)
G178541 NA other upstream 167083 451126 ~ 456354 (+)
G178503 NA other upstream 356709 264517 ~ 266728 (+)
cunh11orf98 lrp6,tmem214,LOC107569942,LOC107680820,LOC107701357,LOC107570162 other upstream 409162 100804 ~ 214275 (+)
crebl2 crebl2,LOC107658994,LOC107707978 other downstream 143805 775376 ~ 778365 (+)
G178593 NA other downstream 204779 836350 ~ 838553 (+)

Expression


Co-expression Network