LOC122333222


Basic Information

Item Value
gene id LOC122333222
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 189060 ~ 196934 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230750.1
CGCTCACGTGATTCTCGCGAGATCTCCGACAGGCGCGCGTTCAAATATTCAGACCGAGGTTCTACTCAACAAAAACACTCGCgaaaaacagcttaaaaatataaacaccgCCTTTTATTCATCGAGATACATATAGTATATGTGATGGGTGTCTCTGAGCTCTGGTCGATCCTGGACCCGGTCCGTGAGTCGGTTCCGCTCTACAGTCTGTCGGGGAAGACCCTCGCCGTGGACCTCAGCCTGTGGGTGTGCGAGGCCCAGCACGTGCAGGGCATGATGGGAAAAGTCACCAGACCTCATCTCAGGAACCTGTTCTTCCGCGTGTCTTCGCTCACGCTGATGGGAGTGAAGCTGGTGTTTGTGATGGAGGGAGACGCCCCGAGCATCAAAGCCCAGACCATGAGCAAACGCAACGAGATGAGATACGCCCGAGCCAAGGCCAAGCCGGGGGCAGCTAAAAACACCAGCAGAGGCCGATTCAAGGCCGTCCTGAGAGAGTGTGCCGAGATGCTGGACTGTCTGGGAGTGCCGTGGGTGACGGCGGCCGGCGAGGCGGAGGCTATGTGTGCCTTTCTGGACTCTCAGGGTGCCGTGGACGGATGCATCACTAACGACGGAGATGCCTTCTTATACGGCGCTCAGACCGTCTACAGGAACTTCAACATGACTACAAAGGATCCTCAGGTGGACTGCTATCAGACGAGTCGTGTTCGGGCTGAGCTCGGGCTCTCCAGAGACTCTCTCGTGGGACTGGCCGTCCTGCTGGGCTGCGACTACATCCCCAAGGGCGTCGCTGGAGTCGGCAAAGAACAGGCGCTGAAGCTGATTCAGAATCTGAAAGGAAAAAGTCTTCTGCAAAAGTTCACTGAGTGGGGCTCAGACAGAGCTGAGGGGTCAGAGGTCGTGGTGAAGAAGGTCACACACTGTCTGGTCTGCCGGCACCCGGGCTCTGCTAAAGCTCACGAGCGCAGCGGCTGTGTTTTCTGTGAGAGCCAGCGCTTCTGTTCGCCGCAGGACTACGACTCCCAGTGTCCCTGTGACTGGCACCGCACCGAACACACTCGCCAGGCCTCCTCCGTCGAAGCCAGCGTCAGGAAGAAGACGCTGGCGAGTGAGCACTTCCCCTTCACGGAGGTCATCAGGGAGTTTCTGGAGACGAAGGATCGAGCGAGCGCCCCGTTCCGCCGGAGGAAGCCCAGTCTGCTGCTGATGCAGACGTTTGCTCTGGAGAAGATGGACTGGCCCAAACACTACAGCAGCGAGAAGCTCCTGTCTCTGATGACCTACAGCGAGCTGGTGAACCGCAGACACGGCCGAGAGCCGCAGCTCCAGCCCCTCAgAATACATAAACCACGGGTCAGGAACGGCGTCTCCTGCTTCGAGGTCGTCTGGAAGAAACCAGATCACTTCGTGTTCTCCGAGGGCCGTGAGGAGCAGACGGAGGTCAGGACGCTGGAGGAAGAGTCTCTCTTCGGTCTGGCCTTTCCTGAGATCCTTCAGGACTTCCAGCAGCAGAGAGCCGGAGCTCAGAaaAGGAAGCCGAAAGCAAGGAAGGAGAAGCCGTCTGATTCCCATGATGCCGTGTCGGATCTCTTCGCTCAGATGTCTCTGAAGACAGAAACGGATCCGGACCCTGAATCCTCCCAGAGTCCTCCGCCTCCTGAGACCCGGCCGCCGCTTCCTTCCCAGAATCCCCTGTCCGAGTcggctctgattggccagctgcaCCTCAGCAGTATAGACTGGGACTCTTCGTCGTTCACGGCCTCGCCGTCCCAGAATCCTCCGAGCGACAGGACCGACCCGGGACCGGCGGAAAACACAAGCTGTTCCCCTCAGGAGCCACTAATGACGAAAAACACCCGGAAACAGACGCCCGGAAGTCCTGGACCTGAAGAGCGCTCGGTCCCAGCTAACGGCCGAAAGACCCAAACCAGCAGAAACCCTCACAGACCAAAGAAGAGCTTCGACAGCGATGAGGAGAACCGACAGCGGCCCCGGGTCAGGTCCAGAGCGCTCAAACCGGCCCGGAACCAGCACACGCTCAGCCAGGTGCATCATGGGACGCCCGAGGAGGACTCTTCGGACTCTTCGCTGGACAGCCCTCGCCCGCTGGCCGAGAGACTCAAGATGAGGTTTGCCAAAGTGACCCAGAACTCATTCGTTTGATACGCAGTCTGTCTTTTAATAAGCAGTTTTAGTCATATTTCTGTTTATCGGAGAGACGCTTCTTTCTTGATTCTGTGATGAATAAAACGtccaaaagagcagcatttgcttaaaatagaaatcaaaGCCTTTACTATCGCTTTTTATTAAACTGACATCCCTccagaataaaagttttcatgtcttaaaaaaaaaattac
>XM_043230751.1
AGGCGCGCGTTCAAATATTCAGACCGAGGTTCTACTCAACAAAAACACTCGCgaaaaacagcttaaaaatataaacaccgCCTTTTATTCATCGAGATACATATAGTATATGTAAGTAAGCGGTACGTCTCACACTGTTCCTCTGTGAGGCGCGACTTGAcgGTGATGGGTGTCTCTGAGCTCTGGTCGATCCTGGACCCGGTCCGTGAGTCGGTTCCGCTCTACAGTCTGTCGGGGAAGACCCTCGCCGTGGACCTCAGCCTGTGGGTGTGCGAGGCCCAGCACGTGCAGGGCATGATGGGAAAAGTCACCAGACCTCATCTCAGGAACCTGTTCTTCCGCGTGTCTTCGCTCACGCTGATGGGAGTGAAGCTGGTGTTTGTGATGGAGGGAGACGCCCCGAGCATCAAAGCCCAGACCATGAGCAAACGCAACGAGATGAGATACGCCCGAGCCAAGGCCAAGCCGGGGGCAGCTAAAAACACCAGCAGAGGCCGATTCAAGGCCGTCCTGAGAGAGTGTGCCGAGATGCTGGACTGTCTGGGAGTGCCGTGGGTGACGGCGGCCGGCGAGGCGGAGGCTATGTGTGCCTTTCTGGACTCTCAGGGTGCCGTGGACGGATGCATCACTAACGACGGAGATGCCTTCTTATACGGCGCTCAGACCGTCTACAGGAACTTCAACATGACTACAAAGGATCCTCAGGTGGACTGCTATCAGACGAGTCGTGTTCGGGCTGAGCTCGGGCTCTCCAGAGACTCTCTCGTGGGACTGGCCGTCCTGCTGGGCTGCGACTACATCCCCAAGGGCGTCGCTGGAGTCGGCAAAGAACAGGCGCTGAAGCTGATTCAGAATCTGAAAGGAAAAAGTCTTCTGCAAAAGTTCACTGAGTGGGGCTCAGACAGAGCTGAGGGGTCAGAGGTCGTGGTGAAGAAGGTCACACACTGTCTGGTCTGCCGGCACCCGGGCTCTGCTAAAGCTCACGAGCGCAGCGGCTGTGTTTTCTGTGAGAGCCAGCGCTTCTGTTCGCCGCAGGACTACGACTCCCAGTGTCCCTGTGACTGGCACCGCACCGAACACACTCGCCAGGCCTCCTCCGTCGAAGCCAGCGTCAGGAAGAAGACGCTGGCGAGTGAGCACTTCCCCTTCACGGAGGTCATCAGGGAGTTTCTGGAGACGAAGGATCGAGCGAGCGCCCCGTTCCGCCGGAGGAAGCCCAGTCTGCTGCTGATGCAGACGTTTGCTCTGGAGAAGATGGACTGGCCCAAACACTACAGCAGCGAGAAGCTCCTGTCTCTGATGACCTACAGCGAGCTGGTGAACCGCAGACACGGCCGAGAGCCGCAGCTCCAGCCCCTCAgAATACATAAACCACGGGTCAGGAACGGCGTCTCCTGCTTCGAGGTCGTCTGGAAGAAACCAGATCACTTCGTGTTCTCCGAGGGCCGTGAGGAGCAGACGGAGGTCAGGACGCTGGAGGAAGAGTCTCTCTTCGGTCTGGCCTTTCCTGAGATCCTTCAGGACTTCCAGCAGCAGAGAGCCGGAGCTCAGAaaAGGAAGCCGAAAGCAAGGAAGGAGAAGCCGTCTGATTCCCATGATGCCGTGTCGGATCTCTTCGCTCAGATGTCTCTGAAGACAGAAACGGATCCGGACCCTGAATCCTCCCAGAGTCCTCCGCCTCCTGAGACCCGGCCGCCGCTTCCTTCCCAGAATCCCCTGTCCGAGTcggctctgattggccagctgcaCCTCAGCAGTATAGACTGGGACTCTTCGTCGTTCACGGCCTCGCCGTCCCAGAATCCTCCGAGCGACAGGACCGACCCGGGACCGGCGGAAAACACAAGCTGTTCCCCTCAGGAGCCACTAATGACGAAAAACACCCGGAAACAGACGCCCGGAAGTCCTGGACCTGAAGAGCGCTCGGTCCCAGCTAACGGCCGAAAGACCCAAACCAGCAGAAACCCTCACAGACCAAAGAAGAGCTTCGACAGCGATGAGGAGAACCGACAGCGGCCCCGGGTCAGGTCCAGAGCGCTCAAACCGGCCCGGAACCAGCACACGCTCAGCCAGGTGCATCATGGGACGCCCGAGGAGGACTCTTCGGACTCTTCGCTGGACAGCCCTCGCCCGCTGGCCGAGAGACTCAAGATGAGGTTTGCCAAAGTGACCCAGAACTCATTCGTTTGATACGCAGTCTGTCTTTTAATAAGCAGTTTTAGTCATATTTCTGTTTATCGGAGAGACGCTTCTTTCTTGATTCTGTGATGAATAAAACGtccaaaagagcagcatttgcttaaaatagaaatcaaaGCCTTTACTATCGCTTTTTATTAAACTGACATCCCTccagaataaaagttttcatgtcttaaaaaaaaaattacc
>XM_043230752.1
GACAGGCGCGCGTTCAAATATTCAGACCGAGGTTCTACTCAACAAAAACACTCGCgaaaaacagcttaaaaatataaacaccgCCTTTTATTCATCGAGATACATATAGTATATGTAAGTAAGCGGTGATGGGTGTCTCTGAGCTCTGGTCGATCCTGGACCCGGTCCGTGAGTCGGTTCCGCTCTACAGTCTGTCGGGGAAGACCCTCGCCGTGGACCTCAGCCTGTGGGTGTGCGAGGCCCAGCACGTGCAGGGCATGATGGGAAAAGTCACCAGACCTCATCTCAGGAACCTGTTCTTCCGCGTGTCTTCGCTCACGCTGATGGGAGTGAAGCTGGTGTTTGTGATGGAGGGAGACGCCCCGAGCATCAAAGCCCAGACCATGAGCAAACGCAACGAGATGAGATACGCCCGAGCCAAGGCCAAGCCGGGGGCAGCTAAAAACACCAGCAGAGGCCGATTCAAGGCCGTCCTGAGAGAGTGTGCCGAGATGCTGGACTGTCTGGGAGTGCCGTGGGTGACGGCGGCCGGCGAGGCGGAGGCTATGTGTGCCTTTCTGGACTCTCAGGGTGCCGTGGACGGATGCATCACTAACGACGGAGATGCCTTCTTATACGGCGCTCAGACCGTCTACAGGAACTTCAACATGACTACAAAGGATCCTCAGGTGGACTGCTATCAGACGAGTCGTGTTCGGGCTGAGCTCGGGCTCTCCAGAGACTCTCTCGTGGGACTGGCCGTCCTGCTGGGCTGCGACTACATCCCCAAGGGCGTCGCTGGAGTCGGCAAAGAACAGGCGCTGAAGCTGATTCAGAATCTGAAAGGAAAAAGTCTTCTGCAAAAGTTCACTGAGTGGGGCTCAGACAGAGCTGAGGGGTCAGAGGTCGTGGTGAAGAAGGTCACACACTGTCTGGTCTGCCGGCACCCGGGCTCTGCTAAAGCTCACGAGCGCAGCGGCTGTGTTTTCTGTGAGAGCCAGCGCTTCTGTTCGCCGCAGGACTACGACTCCCAGTGTCCCTGTGACTGGCACCGCACCGAACACACTCGCCAGGCCTCCTCCGTCGAAGCCAGCGTCAGGAAGAAGACGCTGGCGAGTGAGCACTTCCCCTTCACGGAGGTCATCAGGGAGTTTCTGGAGACGAAGGATCGAGCGAGCGCCCCGTTCCGCCGGAGGAAGCCCAGTCTGCTGCTGATGCAGACGTTTGCTCTGGAGAAGATGGACTGGCCCAAACACTACAGCAGCGAGAAGCTCCTGTCTCTGATGACCTACAGCGAGCTGGTGAACCGCAGACACGGCCGAGAGCCGCAGCTCCAGCCCCTCAgAATACATAAACCACGGGTCAGGAACGGCGTCTCCTGCTTCGAGGTCGTCTGGAAGAAACCAGATCACTTCGTGTTCTCCGAGGGCCGTGAGGAGCAGACGGAGGTCAGGACGCTGGAGGAAGAGTCTCTCTTCGGTCTGGCCTTTCCTGAGATCCTTCAGGACTTCCAGCAGCAGAGAGCCGGAGCTCAGAaaAGGAAGCCGAAAGCAAGGAAGGAGAAGCCGTCTGATTCCCATGATGCCGTGTCGGATCTCTTCGCTCAGATGTCTCTGAAGACAGAAACGGATCCGGACCCTGAATCCTCCCAGAGTCCTCCGCCTCCTGAGACCCGGCCGCCGCTTCCTTCCCAGAATCCCCTGTCCGAGTcggctctgattggccagctgcaCCTCAGCAGTATAGACTGGGACTCTTCGTCGTTCACGGCCTCGCCGTCCCAGAATCCTCCGAGCGACAGGACCGACCCGGGACCGGCGGAAAACACAAGCTGTTCCCCTCAGGAGCCACTAATGACGAAAAACACCCGGAAACAGACGCCCGGAAGTCCTGGACCTGAAGAGCGCTCGGTCCCAGCTAACGGCCGAAAGACCCAAACCAGCAGAAACCCTCACAGACCAAAGAAGAGCTTCGACAGCGATGAGGAGAACCGACAGCGGCCCCGGGTCAGGTCCAGAGCGCTCAAACCGGCCCGGAACCAGCACACGCTCAGCCAGGTGCATCATGGGACGCCCGAGGAGGACTCTTCGGACTCTTCGCTGGACAGCCCTCGCCCGCTGGCCGAGAGACTCAAGATGAGGTTTGCCAAAGTGACCCAGAACTCATTCGTTTGATACGCAGTCTGTCTTTTAATAAGCAGTTTTAGTCATATTTCTGTTTATCGGAGAGACGCTTCTTTCTTGATTCTGTGATGAATAAAACGtccaaaagagcagcatttgcttaaaatagaaatcaaaGCCTTTACTATCGCTTTTTATTAAACTGACATCCCTccagaataaaagttttcatgtcttaaaaaaaaaattacc

Function

GO: NA

KEGG:

id description
K15338 GEN1, GEN; flap endonuclease GEN

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230750.1 False 2369 mRNA 0.56 14 189061 196934
XM_043230751.1 True 2391 mRNA 0.56 14 189060 196904
XM_043230752.1 False 2354 mRNA 0.56 14 189060 196907

Neighbor

gene id symbol gene type direction distance location
msgn1 msgn1,LOC107569960 coding downstream 37 187575 ~ 189023 (-)
si:ch211-51e12.7 NA coding downstream 2235 180685 ~ 186825 (-)
tulp4a tulp4,tulp4a,LOC107701364,LOC107680826,LOC107569944 coding downstream 12445 160431 ~ 176615 (-)
tmem181 tmem181,LOC107569951,LOC107570171 coding downstream 29951 152337 ~ 159109 (-)
mansc1 LOC107738566,LOC107701368,LOC107579796,LOC107569943 coding downstream 38952 145860 ~ 150108 (-)
agbl5 agbl5 coding upstream 1195 198129 ~ 211887 (-)
trnaa-agc_30 NA coding upstream 15237 212171 ~ 212243 (-)
trnay-gua_46 NA coding upstream 15977 212911 ~ 212998 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 16280 213214 ~ 222229 (-)
mapre3b mapre3b,mapre3,LOC107729016,LOC107701363,LOC107570175,LOC101073432 coding upstream 26436 223370 ~ 229970 (-)
LOC122333180 NA non-coding downstream 142059 34201 ~ 47001 (-)
G178746 NA non-coding upstream 165033 361967 ~ 391304 (-)
LOC122333201 grik2,LOC107574533,LOC107758138,LOC108233439,LOC106535628,LOC107377647,LOC103044887,LOC108435120,LOC108279510,LOC103365520 non-coding upstream 185368 382302 ~ 389371 (-)
G178759 NA non-coding upstream 209581 406515 ~ 408166 (-)
G178742 NA non-coding upstream 281259 478193 ~ 480561 (-)
G178779 NA non-coding upstream 343125 540059 ~ 540286 (-)
G178709 dpysl5,dpysl5b other upstream 26415 223349 ~ 235752 (-)
dpysl5b dpysl5,dpysl5b other upstream 33478 230412 ~ 245009 (-)
sobpb sobpb,LOC107701362,LOC107570168,LOC107738580,LOC107569949,LOC107680816 other upstream 48144 245078 ~ 259665 (-)
G178734 NA other upstream 110278 307212 ~ 336614 (-)
G178757 etv6,LOC107758141,LOC107698007 other upstream 261119 458053 ~ 520366 (-)

Expression


Co-expression Network