Item | Value |
---|---|
gene id | msgn1 |
gene name | msgn1,LOC107569960 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NW_025047891.1 |
NCBI id | JAEQBD010000236.1 |
chromosome length | 1270053 |
location | 187575 ~ 189023 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
msgn1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within paraxial mesodermal cell differentiation; regulation of transcription by RNA polymerase II; and somatic muscle development. Predicted to be active in nucleus. Is expressed in fin; margin; mesoderm; myoblast; and tail bud. Orthologous to human MSGN1 (mesogenin 1). |
description |
---|
unnamed protein product |
id | name | namespace |
---|---|---|
GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
GO:0007525 | somatic muscle development | biological_process |
GO:0042789 | mRNA transcription by RNA polymerase II | biological_process |
GO:0048342 | paraxial mesodermal cell differentiation | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005488 | binding | molecular_function |
GO:0001076 | obsolete transcription factor activity, RNA polymerase II transcription factor binding | molecular_function |
id | description |
---|---|
K09077 | MSGN1; mesogenin 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043230753.1 | True | 1449 | mRNA | 0.47 | 1 | 187575 | 189023 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
si:ch211-51e12.7 | NA | coding | downstream | 750 | 180685 ~ 186825 (-) |
tulp4a | tulp4,tulp4a,LOC107701364,LOC107680826,LOC107569944 | coding | downstream | 10960 | 160431 ~ 176615 (-) |
tmem181 | tmem181,LOC107569951,LOC107570171 | coding | downstream | 28466 | 152337 ~ 159109 (-) |
mansc1 | LOC107738566,LOC107701368,LOC107579796,LOC107569943 | coding | downstream | 37467 | 145860 ~ 150108 (-) |
lrp6 | lrp6,LOC102306404,LOC100705426 | coding | downstream | 42582 | 118043 ~ 144993 (-) |
LOC122333222 | NA | coding | upstream | 37 | 189060 ~ 196934 (-) |
agbl5 | agbl5 | coding | upstream | 9106 | 198129 ~ 211887 (-) |
trnaa-agc_30 | NA | coding | upstream | 23148 | 212171 ~ 212243 (-) |
trnay-gua_46 | NA | coding | upstream | 23888 | 212911 ~ 212998 (-) |
tmem214 | tmem214,LOC104961504,LOC106608390 | coding | upstream | 24191 | 213214 ~ 222229 (-) |
LOC122333180 | NA | non-coding | downstream | 140574 | 34201 ~ 47001 (-) |
G178746 | NA | non-coding | upstream | 172944 | 361967 ~ 391304 (-) |
LOC122333201 | grik2,LOC107574533,LOC107758138,LOC108233439,LOC106535628,LOC107377647,LOC103044887,LOC108435120,LOC108279510,LOC103365520 | non-coding | upstream | 193279 | 382302 ~ 389371 (-) |
G178759 | NA | non-coding | upstream | 217492 | 406515 ~ 408166 (-) |
G178742 | NA | non-coding | upstream | 289170 | 478193 ~ 480561 (-) |
G178779 | NA | non-coding | upstream | 351036 | 540059 ~ 540286 (-) |
G178709 | dpysl5,dpysl5b | other | upstream | 34326 | 223349 ~ 235752 (-) |
dpysl5b | dpysl5,dpysl5b | other | upstream | 41389 | 230412 ~ 245009 (-) |
sobpb | sobpb,LOC107701362,LOC107570168,LOC107738580,LOC107569949,LOC107680816 | other | upstream | 56055 | 245078 ~ 259665 (-) |
G178734 | NA | other | upstream | 118189 | 307212 ~ 336614 (-) |
G178757 | etv6,LOC107758141,LOC107698007 | other | upstream | 269030 | 458053 ~ 520366 (-) |