msgn1 (msgn1,LOC107569960)



Basic Information


Item Value
gene id msgn1
gene name msgn1,LOC107569960
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 187575 ~ 189023 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043230753.1
tatatatatatatatatatatatcatcctTGTGTATTTCAATTTCAGACGTTTATTTTACctgtatactatatatttaacAGTATAATCTGTGGTGATCATCATCACAATAAGAGGAAGGTTTCGTTGAAGAGTCAAACATCCTCTGGGCCTGAAGGAAGCCGTCAGAACAACATCAGGATCAAAGTAACGCTCGGGTCCTAAACAGGACGTAAACGCCGCTCACTTCCTGTCAGGCCTTGATCCTGAGTGACAGCTGTCACACCTCTCCAGACAGCTGCGGCGCTTCTTCACATCAGATCTCTTCATTAACAGCCTTCAGCTCTTTACTGTGTCTCTTACTTCATCTATGATCCATTCATCTTTCAGCTTTTGATCAGGTTTTGTTAACTTGACTactttaaccaaaaaaaaaaaaaatcatgaataaaGTGTTTTAGAAATATGAGAATATATATGAGAACATTCATCATGGGAAagttacttttgaatgtttttaaaaaccgcATAAACGAcgcataaataatgttttggttCTAAAGTTATTAAAAGCCGGATAACCGTGAACGAACGTTTTAATAACGTTCCTGCAACGAATCCTGAGCAGAATACGAGCGTAGAGAAGTTTTATTTCTAGCCGTTTTTCTCTTCGATGTTAATTGCGAGGCGCGCTCGTGTGAAGCGCGTCTGATCGCGTCGCGGCGCTAATTGTCGTCGCGTCGACTTAAAGAGTCGTTTCCCACAAAAGGGAatctaattattttcttttctctttcacgTTATCCGCCAACATCGCCTCGTTCGCACGTGGGTGGCGAGCCGCCTTTGAACTCGGCGCCCATAAAAGCGGCGGGCTTCGTCTTCGGCGCACTTTCTCCTCGCGTCATGGCGCAGATCGACGTCGACGCGTTCACGGCGCAGGTCCTGTCTCACTGGGACTGGAGCAGAGAGGACGCCTCCTCGCCGGAGTCCGGCCTCGGAGACGAGCAGCACAAGCCCAAGGCGAAGATGAGCgcgaagaggaggatgaaggcCAGCGAGCGCGAGAAGCTGCGCATGCGCAGTCTGGCGGAGGCACTGCATCAGCTGCGCGAGTATCTCCCTCCGGTCTACAGCCGCGGGGCGCAGCCGCTCACCAAGATCCAGACGCTCAAATACACCATCCAGTACATCAAGGAACTGTCCGGCATCCTCGAGCAGCAGGTCTGACGCGTCGCGTCGCGGAACGTTGTTGCTTCGGGACTGAACGTTACGGAAACGCTCCACGAACTCTTCCCAATCCGCTGTACAGATTAATATTGCtccgtgtttgtttgttcgtcCGCTCCCGGGAAGTCTTTCGGATGTAAATATTTCTTGCTGGTGCTTGAGTGGAGCCTCggtgtctttaaaaaaatacgtTTTGAACTGGAAAGCTGAATAAACGTGTGTTCGTGTTTATAGAAACTGG

Function


symbol description
msgn1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within paraxial mesodermal cell differentiation; regulation of transcription by RNA polymerase II; and somatic muscle development. Predicted to be active in nucleus. Is expressed in fin; margin; mesoderm; myoblast; and tail bud. Orthologous to human MSGN1 (mesogenin 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007525 somatic muscle development biological_process
GO:0042789 mRNA transcription by RNA polymerase II biological_process
GO:0048342 paraxial mesodermal cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005488 binding molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
K09077 MSGN1; mesogenin 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043230753.1 True 1449 mRNA 0.47 1 187575 189023

Neighbor


gene id symbol gene type direction distance location
si:ch211-51e12.7 NA coding downstream 750 180685 ~ 186825 (-)
tulp4a tulp4,tulp4a,LOC107701364,LOC107680826,LOC107569944 coding downstream 10960 160431 ~ 176615 (-)
tmem181 tmem181,LOC107569951,LOC107570171 coding downstream 28466 152337 ~ 159109 (-)
mansc1 LOC107738566,LOC107701368,LOC107579796,LOC107569943 coding downstream 37467 145860 ~ 150108 (-)
lrp6 lrp6,LOC102306404,LOC100705426 coding downstream 42582 118043 ~ 144993 (-)
LOC122333222 NA coding upstream 37 189060 ~ 196934 (-)
agbl5 agbl5 coding upstream 9106 198129 ~ 211887 (-)
trnaa-agc_30 NA coding upstream 23148 212171 ~ 212243 (-)
trnay-gua_46 NA coding upstream 23888 212911 ~ 212998 (-)
tmem214 tmem214,LOC104961504,LOC106608390 coding upstream 24191 213214 ~ 222229 (-)
LOC122333180 NA non-coding downstream 140574 34201 ~ 47001 (-)
G178746 NA non-coding upstream 172944 361967 ~ 391304 (-)
LOC122333201 grik2,LOC107574533,LOC107758138,LOC108233439,LOC106535628,LOC107377647,LOC103044887,LOC108435120,LOC108279510,LOC103365520 non-coding upstream 193279 382302 ~ 389371 (-)
G178759 NA non-coding upstream 217492 406515 ~ 408166 (-)
G178742 NA non-coding upstream 289170 478193 ~ 480561 (-)
G178779 NA non-coding upstream 351036 540059 ~ 540286 (-)
G178709 dpysl5,dpysl5b other upstream 34326 223349 ~ 235752 (-)
dpysl5b dpysl5,dpysl5b other upstream 41389 230412 ~ 245009 (-)
sobpb sobpb,LOC107701362,LOC107570168,LOC107738580,LOC107569949,LOC107680816 other upstream 56055 245078 ~ 259665 (-)
G178734 NA other upstream 118189 307212 ~ 336614 (-)
G178757 etv6,LOC107758141,LOC107698007 other upstream 269030 458053 ~ 520366 (-)

Expression



Co-expression Network