Gene
RNA
| Item | Value |
|---|---|
| gene id | G22601 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 879631 ~ 879868 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU25508 | True | 238 | lncRNA | 0.56 | 1 | 879631 | 879868 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000003_00842413_00868623 | TNK2 | coding | upstream | 10968 | 842413 ~ 868663 (+) |
| CI01000003_00747650_00802075 | NA | coding | upstream | 76950 | 746547 ~ 802681 (+) |
| CI01000003_00731635_00742538 | TFR1A | coding | upstream | 137022 | 731200 ~ 742609 (+) |
| CI01000003_00665762_00716862 | DLG1, DLG1L | coding | upstream | 162252 | 664961 ~ 717379 (+) |
| CI01000003_00644619_00663181 | NA | coding | upstream | 216351 | 643655 ~ 663280 (+) |
| CI01000003_00981851_01059504 | TMTOPSA | coding | downstream | 101983 | 981851 ~ 1059504 (+) |
| CI01000003_01126525_01129929 | ADIPOQB | coding | downstream | 246230 | 1126098 ~ 1130325 (+) |
| CI01000003_01140472_01168860 | NA | coding | downstream | 260474 | 1140342 ~ 1168900 (+) |
| CI01000003_01258265_01259530 | NA | coding | downstream | 378397 | 1258265 ~ 1259551 (+) |
| CI01000003_01280201_01309764 | NA | coding | downstream | 399899 | 1279767 ~ 1310125 (+) |
| G22574 | NA | non-coding | upstream | 60091 | 817798 ~ 819540 (+) |
| G22583 | NA | non-coding | upstream | 134693 | 744681 ~ 744938 (+) |
| G22585 | NA | non-coding | upstream | 297226 | 582068 ~ 582405 (+) |
| G22551 | NA | non-coding | upstream | 318019 | 560920 ~ 561612 (+) |
| G22544 | NA | non-coding | upstream | 356978 | 522149 ~ 522653 (+) |
| G22602 | NA | non-coding | downstream | 85 | 879953 ~ 880262 (+) |
| G22603 | NA | non-coding | downstream | 753 | 880621 ~ 880871 (+) |
| G22605 | NA | non-coding | downstream | 2737 | 882605 ~ 882932 (+) |
| G22615 | NA | non-coding | downstream | 16253 | 896121 ~ 896329 (+) |
| G22625 | NA | non-coding | downstream | 33666 | 913534 ~ 913794 (+) |
| CI01000003_00390997_00406970 | WDR33 | other | upstream | 484417 | 390622 ~ 408312 (+) |
| G22420 | NA | other | upstream | 690192 | 179531 ~ 189439 (+) |
| G22578 | NA | other | downstream | 44935 | 924803 ~ 925248 (+) |
| CI01000003_01863421_01867859 | NA | other | downstream | 983400 | 1862854 ~ 1868137 (+) |
| G23870 | NA | other | downstream | 1400792 | 2280660 ~ 2285641 (+) |
