lrig3 (lrig3,LOC107710079,LOC107707969,LOC104942525)


Basic Information

Item Value
gene id lrig3
gene name lrig3,LOC107710079,LOC107707969,LOC104942525
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047891.1
NCBI id JAEQBD010000236.1
chromosome length 1270053
location 579792 ~ 599671 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043230815.1
GCAGTCTCCGCCCACGGGAGCGCGCGCCGCGGAATGCTGCTCTGATTCCAGCGCGGTGGAAAAAAGTTTCTCAGAGATGGAGCGAGTGGCGAGGCGCTGATATCTGCACTTTTACCCATGGTATTAAACGCGAAAAGGAGATTCAGTTGACGTGGACCCGCCGGGAACCTTCCCCTCTTCCATATTCTTGCGGAATTAAAACTTTTACGGATCGGTTACGTCCacttttttatcagttttcttCCTCTGGGTGAAAATGCCGCAGCCCGCTCGCGCTGTGAGCTTCGCGCTGCTCGTGTTTCACGTTACGGGATTTACAGCGATTAACGGAGGCTCGGATCGATCGGAACCGGAGCCGTGTCCGGCTGCGTGCTCGTGTGCGGGATCTTTAGCGGACTGTAGCGGATTAAAACACGGCAGGATCCCGGAGAGGCTGCCCGCGCGGATCACGCGTCTgGATCTGAGCCATAACAAGTTACGCACGTTTCCCGAGGCGCTGCTCGCCAGTCTGCCGCAGCTCAGCGAAATAAAACTGAGTAACAACGAGTTCGAGTCGATCCCGGATTTGGGCCCAAATGCTGGAAACCTCAGCAGTCTGATTCTAGCAAACAACAGGATCTCGAGGATCTCGGCAGAGCGTCTCAGTTCGCTGGTCGCCCTGGAGACACTGGACCTTAGCAACAACAATATTATGGAGGTTCGCGCCGGGgcttttcctcctcttcctctgaaAAACCTGTTGGTGAATAATAACCGTATTTCCACGCTGGAGCATGGCTGCTTTAGTAACCTGTCCAACTCGTTGCTGGTGTTAAAACTCAACAAAAACCGGCTGAGCTCCATCCCGCCCAAGATCTTCCCTCTGCCACACCTGCAGCACCTAGAGCTGAGCAGGAACCGCGTGCGGCGCATCGAGGGTCTGACGTTCCACGGCCTTCACGGCCTGCGCTCGCTGAAGATCCAGAGGAACGGCATCACGCGGCTCATGGACGGTGCTTTCTGGGGTCTGAACAACATGGAAGTCCTgcAGCTGGAGTACAATAACCTGACGGAGGTGAGCAAAGGCTGGCTCTACGGCCTCCTGACGCTTCAGCAGCTGCATCTGTCTCACAACGCCATCAGCCGCATCAAACCCGACGCCTGGGAGTTCTGCCAGAAACTCGCCGAGCTTGATCTGAGCTGGAACCAGTTGAGCCGTTTGGAGGAAAGCAGTTTTGTTGGCCTCAGCGTCCTCGAGCAGCTCCACATCGGAAACAACCGCGTCAGTTTCATCGCTGACGGAGCGTTTCGAGGCCTGTCCAACCTGCAGGCGCTGGATCTGAAGTATAATGAAATCTCATGGACTATTGAGGACATGAACGGACCTTTCTCTGCTCTCGACAATCTGAGGAAACTgTTCCTCCAAGGCAATCGTATCCGATCGGTCACCAGGAAGTCCTTCACAGGCCTAGACATGCTGGAGCAGCTGGACTTGAGCAACAACGCCATCATGTCGGTTCAAGCCAACGCTTTCTCTCAGATGAAGAAGCTGACCGAGCTGCACCTGAACACGTCCAGTCTTCTCTGCGACTGCCAGCTCAAGTGGTTTTCTCCGTGGGTGGCCGAGCACGCTTTCCTTCCTCTGGTGAACGCCAGCTGCGCCCATCCACATCTGCTCAAGGGCAAGAGCGTCTTCGCCGTGGCCCAGGACGAGTTTGTGTGCGATGATTTCCCCAAACCCCAGATCACCGTTCAGCCTGAGACGCAGTCGGCCATCAAAGGCACTAACGTGACGTTCGTCTGCTCGGCGGCCAGCTCCAGCGACTCCCCGATGACCTTCGCCTGGAAGAAGGACAACGAGATCCTGAACGACGCAGAGATTCATAACCAGGCTCACCTGCGCTCTCAGGCCGGAGAGGTCAGCGAGGTCACGGAGTACACCACCACCCTGCAGCTGCGGCACGTGGAGTTCACTAGCGAGGGAAAATACCAGTGCGTCATCTCCAACCACTTCGGCTCCTCGTACTCGGTCAAAGCCAAACTCACCGTCCACATGCTGCCGTACTTCACAAAAATGCCGATGGATCTGACGATTCGGGCCGGAGCCACAGCTCGCCTGGAGTGTGCCGCCAGCGGCCACCCGTCTCCTCAGATCGCCTGGCAGAAGGACGGAGGAACGGACTTCCCCGCGGCCCGAGAGCGGCGCATGCACGTCATGCCGAGGGATGACGTTTTCTTCATCGTGGACGTGAAGACGGAGGACATCGGCGTTTATAGCTGCACTGCGCAAAACACCGCTGGCTCCATCTCTGCTAACGCTACGCTAACGGTGCTGGAGACGCCGTCGTTCCTGCGTCCGCTGATGGACCGGGCGGTGGTGAAGGGCGAGACGGCCGTGCTGCAGTGTATCGCCGGCGGCAGTCCTCCGCCTCGCCTCAACTGGACCAAAGACGACAGCCCTCTGCAGGTGACCGAGAGACACTTCTTCGCCGCCGGGAACCAGCTGCTGATCATCGTGGACGCGGCGGATGGAGACGCGGGCACCTACACCTGCGAGATGTCCAACCCGCTGGGCACCGAGCGAGGGAACGTGCGTCTGGCCGTCATGCCCAACCCCAACTGTGACCCGGGGCCGGCGGCCGGCGGGGCCCTGGGGCCGGAGGAGGACGGCTGGACCACGGTGGGCATCGTGATCATCGCTGTGGTGTGCTGCGTGGTGGGAACCTCGCTGGTGTGGGTCGTGATCATCTACCACACCCGCCGGCGCAACGAGGACTGCAGCGTCACCAACACCGATGAGACGAATCTCCCGGCGGACATCCCGAGCTACCTGTCGTCTCAGGGAACGCTAGCGGAGCGTCAGGACGGCTACATGACGTCTGAGAGCGGCGGCAGCCATCAGTACATCAGCTCCTCCATGGCAGGCTTCTACATGCCACCCAAAGACATCAACAGCCTCTGTCAGCTGGACACAGGAAGTGAGGCGGACATGGAGGCGGCCATCGACCCTCTGCTCTGCCATTATCAAGGGCCGGTGGGATCACTTCTGAGACGGAGCAACCTCTACATCCCCGATCTGCCCGAGTCCTACAGCGCGTGTGCGTCCGAGCAGCGGCCCGCCGGAGCCACTTCCTCCTGCAGCAGGAAGCGGGAGTTCTACACCTGCAGCTCCGCCCTCGAGCCCTTCGATCACATGATGATGCAGCTGGGCGACACTTCCTGTGCAGAGGACTGTGAGAGAGGAGAGTGTGTCCTGGGCTCCTCGGGATCATATATGGggaCGTTTGGGAAGGCTCCGTGGCGTCCTCAGCAGGAGCTCTGCGCTCACAGCGGCGTCATTCTTCACGAGAACCCGTACGCAGCGCTTCACGCCGACTCAGACCTGGACGAGGAGCACGCAGACGCCAGCGTTTACGAGCAGCCCTTCGATCGCCGGACCGCAGAGAGCTTTCCCACGTCACCGCTGGGCTCTTAGCGGCTTCGGCACGAGGCGCCAAAAACCAGAAACGCTCTACCTCAAGAAAGGAGCTGCGACTGAATGTAAATGACACgtttgtacagaaaaaaaaagattatatgcattttataccaaattatattttgtaaattaatagtGTAAATACGACccttatttttcctatttttttcccctgtaaaTGTACGCTTGAGTCTGATGTATACACGACCGATCGGAGGACTCGTTTGATCCGGATCCGTTTATGATGTTTATTCCGCTTTTGCTTTGAATAAAGCGCCGTTTGCACAAACTAGTACACAATAAACATTCCCTTGAGCTGCTACACGTCGTCTTCATA

Function

symbol description
lrig3 Is expressed in brain; eye; pharyngeal arch 3-7; presumptive shield; and shield. Orthologous to human LRIG3 (leucine rich repeats and immunoglobulin like domains 3).

NR:

description
PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043230815.1 True 3794 mRNA 0.57 19 579792 599671

Neighbor

gene id symbol gene type direction distance location
etv6 etv6,LOC107698007 coding upstream 57252 507402 ~ 522540 (+)
LOC122333209 timp3,LOC107569206,LOC107572594 coding upstream 100399 469095 ~ 479393 (+)
rerg rerg,LOC107669035,LOC107662225 coding upstream 130811 432973 ~ 448981 (+)
naga naga,LOC103380792 coding upstream 183008 390952 ~ 396784 (+)
LOC122333200 grik2,LOC107574533,LOC107081635,LOC106535628,LOC108233439,LOC103457461,LOC102223640 coding upstream 190426 352079 ~ 389366 (+)
echdc3 echdc3 coding downstream 13671 613342 ~ 616781 (+)
rtcb rtcb coding downstream 23766 623437 ~ 631571 (+)
trnam-cau_120 NA coding downstream 200263 799934 ~ 800005 (+)
eps8a LOC107561250,LOC107568712,LOC107707945 coding downstream 201874 801545 ~ 835314 (+)
atp23 atp23,xrcc6bp1,LOC106576246,LOC106609469 coding downstream 244684 844355 ~ 847922 (+)
LOC122333249 slc16a7,zgc:165507,LOC107698009,LOC107662218,LOC107568725 non-coding upstream 21319 553127 ~ 558473 (+)
G178557 LOC107662220 non-coding upstream 74255 503211 ~ 505537 (+)
G178550 NA non-coding upstream 122112 447009 ~ 457680 (+)
G178549 NA non-coding upstream 147456 430013 ~ 432336 (+)
G178537 NA non-coding upstream 169980 406511 ~ 409812 (+)
G178577 NA non-coding downstream 38007 637678 ~ 638126 (+)
G178589 LOC106593275 non-coding downstream 87767 687438 ~ 783476 (+)
G178592 LOC107707972,LOC107561230,LOC107658995,LOC107710075,LOC107662214,LOC107568726 non-coding downstream 163887 763558 ~ 769697 (+)
G178617 NA non-coding downstream 198871 798542 ~ 799412 (+)
G178619 NA non-coding downstream 243165 842836 ~ 843975 (+)
LOC122333210 fam19a2,LOC107698008,LOC107662242,LOC107728758,LOC106576259 other upstream 40914 524311 ~ 538878 (+)
G178541 NA other upstream 123438 451126 ~ 456354 (+)
G178503 NA other upstream 313064 264517 ~ 266728 (+)
cunh11orf98 lrp6,tmem214,LOC107569942,LOC107680820,LOC107701357,LOC107570162 other upstream 365517 100804 ~ 214275 (+)
crebl2 crebl2,LOC107658994,LOC107707978 other downstream 175705 775376 ~ 778365 (+)
G178593 NA other downstream 236679 836350 ~ 838553 (+)

Expression


Co-expression Network