Gene
RNA
| Item | Value |
|---|---|
| gene id | G23175 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 1327563 ~ 1327875 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU26152 | True | 313 | lncRNA | 0.40 | 1 | 1327563 | 1327875 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000003_01280201_01309764 | NA | coding | upstream | 17438 | 1279767 ~ 1310125 (+) |
| CI01000003_01258265_01259530 | NA | coding | upstream | 68012 | 1258265 ~ 1259551 (+) |
| CI01000003_01140472_01168860 | NA | coding | upstream | 158663 | 1140342 ~ 1168900 (+) |
| CI01000003_01126525_01129929 | ADIPOQB | coding | upstream | 197238 | 1126098 ~ 1130325 (+) |
| CI01000003_00981851_01059504 | TMTOPSA | coding | upstream | 268059 | 981851 ~ 1059504 (+) |
| CI01000003_01329453_01342093 | NA | coding | downstream | 1578 | 1329453 ~ 1342672 (+) |
| CI01000003_01356590_01360272 | NA | coding | downstream | 28602 | 1356477 ~ 1360348 (+) |
| CI01000003_01382733_01410162 | MIB1 | coding | downstream | 54573 | 1382448 ~ 1410190 (+) |
| CI01000003_01430247_01451033 | NA | coding | downstream | 102372 | 1430247 ~ 1451626 (+) |
| CI01000003_01489211_01493471 | GATA6 | coding | downstream | 159962 | 1487837 ~ 1494025 (+) |
| G23056 | NA | non-coding | upstream | 104901 | 1176830 ~ 1222662 (+) |
| G23039 | NA | non-coding | upstream | 257055 | 1070290 ~ 1070508 (+) |
| G22641 | NA | non-coding | upstream | 398416 | 928942 ~ 929147 (+) |
| G22625 | NA | non-coding | upstream | 413769 | 913534 ~ 913794 (+) |
| G22615 | NA | non-coding | upstream | 431234 | 896121 ~ 896329 (+) |
| G23217 | NA | non-coding | downstream | 17398 | 1345273 ~ 1345574 (+) |
| G23223 | NA | non-coding | downstream | 50184 | 1378059 ~ 1378355 (+) |
| G23242 | NA | non-coding | downstream | 158307 | 1486182 ~ 1486398 (+) |
| G23244 | NA | non-coding | downstream | 176674 | 1504549 ~ 1504981 (+) |
| G23246 | NA | non-coding | downstream | 180375 | 1508250 ~ 1508470 (+) |
| G22578 | NA | other | upstream | 402315 | 924803 ~ 925248 (+) |
| CI01000003_00390997_00406970 | WDR33 | other | upstream | 932349 | 390622 ~ 408312 (+) |
| G22420 | NA | other | upstream | 1138124 | 179531 ~ 189439 (+) |
| CI01000003_01863421_01867859 | NA | other | downstream | 535393 | 1862854 ~ 1868137 (+) |
| G23870 | NA | other | downstream | 952785 | 2280660 ~ 2285641 (+) |
