G23315


Basic Information

Item Value
gene id G23315
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1863892 ~ 1866921 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU26311
TTGACGTTGCCTCTCTGGGTGATGTTTTTGCTGTGTTTCTCGTTGGCCATACGAATCCTCTGTTTGGCGACCATCGTTGCAAATACTGGTGTGTTGGAAAAGGGAGCTGGTCAGTCACAAATATGACGAACACAACACAAACTACTAGTGAGGATGAAGAGAAAACTACGTCGATTTTTGTCTACGTACTCAGAATATAAGTTCCGCCCACACCGGAAGTTTGCAAATGGACTGATGCTTGGACCCCGCCTTTTGAAAAAAGCTGAAACAGCCTGAATTGGGCCTGTCCCAGTGGGCATTGGAACAGACCCACTCTTTCACGATTCGGACATACCCTCGCAGTGAGCCGATAACCGACGATGCCTCTGCGGATAACAATGGCGTAAAGAAGATGAAGATGCAGTTTGCCACTGGTCCACTTCTCAAATTCCAGATTTGTGTCTCCTGAGGATACAAGCGGGTGTTTGAGGAGTACACGCAGGTTTTGTACCAGCGGTACCCAGACATCCGCATAGAAGGAGAGAACTACCTTCCACTGCCTATCTACAGGCACATTGCTTCCTTTATGTCTATGTTTAAGCTGTTTTTAATTGGAGTGATCATTCTAGGCAAAGATCCATTTGCCCTATTTGGTATGCAGGCTCCAGGCATCTGGGTTTGGAGTCAGGAGAATAAGATATATGCCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAATCAATGTATGTCTACGGGTGCTTTTGAAATCACACTCAATGATGTTCCAGTTTGGTCCAAGCTGGAGTCAGGCCACCTGCCTTCCATGCAGCAACTAGTTCAAATTCTGGAGAATGAGATGAAGATGAACGTGCACATGGACACACTTCCACACCATCGCTCGTAACCTTGCCTCTGATTCACTGAATGGAGCCTAGAACCCCTCCACTTTTGTGGTGAAGCTCTCCTACGGTTGTGAGGTGACGTTTATGAAGGTTTGCGCTGAAAGTAGAGCCTCTGCTAGCGCACGCCCGATGTTCTGCGTTCTCCTCACCATGCCCCTCGGAGATGCACCACCTACAGACGCTGGTGCGGGATCCATGGCAACAACAGTGGCCATATAAATATGACTGCAGCCCATCTCTTGTGCAATAGCCATTTGTTTCTGGATATATGTTCACAAGAAATATGTAATAAATCTTTTCTATTTGAGTTCAGTTTGCTCAGTCAACAGAATTTATGATGGCATATATTCCTTTCATTTGATCCTAATGTATGACTAAATCCTGGTCTTTATGTTTTATTTAATAAGTTGATATGAGAAGCTTCTAACTTATACAGCTAATCCCCATCATGATAATTTAACATTTAAGTAACATTAATTATATTTCTGAGCCCTGGT
>TU26312
TTGACGTTGCCTCTCTGGGTGATGTTTTTGCTGTGTTTCTCGTTGGCCATACGAATCCTCTGTTTGGCGACCATCGTTGCAAATACTGGTGTGTTGGAAAAGGGAGCTGGTCAGTCACAAATATGACGAACACAACACAAACTACTAGTGAGGATGAAGAGAAAACTACGTCGATTTTTGTCTACGTACTCAGAATATAAGTTCCGCCCACACCGGAAGTTTGCAAATGGACTGATGCTTGGACCCCGCCTTTTGAAAAAAGCTGGTAATAAACGTCAACGCTACATTTTCTAAATTTGTTTTTTAAAATTCGGTAACGACCTTACATAGTGTTGTCAAACGGCTTATATAAATAGTTCATATTAATGAAGACATTAGATTGGCATGTAAATCTTGGATTTTTGCACTGTGTCTGTGGTGTTAAAATTTGTTTTTGGTTTTTATTTGTTTGGTTTTTTTGTTGTTGTTTTTTTTACATTACATGCCAATTAATGGATATGACTTTTAAAACAATGTCACACTATTTCTAGAAAAAACAACAACAACAAATGTGATGTTCAATTTGTGAACGAATTGTTCTTTTGAGTCGAATCTTTTTAATGAATGGATTGAACCGGTTTGCAGAAACAGCCTGAATTGGGCCTGTCCCAGTGGGCATTGGAACAGACCCACTCTTTCACGATTCGGACATACCCTCGCAGTGAGCCGATAACCGACGATGCCTCTGCGGATAACAATGGCGTAAAGAAGATGAAGATGCAGTTTGCCACTGGTCCACTTCTCAAATTCCAGATTTGTGTCTCCTGAGGATACAAGCGGGTGTTTGAGGAGTACACGCAGGTTTTGTACCAGCGGTACCCAGACATCCGCATAGAAGGAGAGAACTACCTTCCACTGCCTATCTACAGGCACATTGCTTCCTTTATGTCTATGTTTAAGCTGTTTTTAATTGGAGTGATCATTCTAGGCAAAGATCCATTTGCCCTATTTGGTATGCAGGCTCCAGGCATCTGGGTTTGGAGTCAGGAGAATAAGATATATGCCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAATCAATGTATGTCTACGGGTGCTTTTGAAATCACACTCAATGATGTTCCAGTTTGGTCCAAGCTGGAGTCAGGCCACCTGCCTTCCATGCAGCAACTAGTTCAAATTCTGGAGAATGAGATGAAGATGAACGTGCACATGGACACACTTCCACACCATCGCTCGTAACCTTGCCTCTGATTCACTGAATGGAGCCTAGAACCCCTCCACTTTTGTGGTGAAGCTCTCCTACGGTTGTGAGGTGACGTTTATGAAGGTTTGCGCTGAAAGTAGAGCCTCTGCTAGCGCACGCCCGATGTTCTGCGTTCTCCTCACCATGCCCCTCGGAGATGCACCACCTACAGACGCTGGTGCGGGATCCATGGCAACAACAGTGGCCATATAAATATGACTGCAGCCCATCTCTTGTGCAATAGCCATTTGTTTCTGGATATATGTTCACAAGAAATATGTAATAAATCTTTTCTATTTGAGTTCAGTTTGCTCAGTCAACAGAATTTATGATGGCATATATTCCTTTCATTTGATCCTAATGTATGACTAAATCCTGGTCTTTATGTTTTATTTAATAAGTTGATATGAGAAGCTTCTAACTTATACAGCTAATCCCCATCATGATAATTTAACATTTAAGTAACATTAATTATATTTCTGAGCCCTGGT
>TU26310
AGTTCAGTAACCGATAGTCGTGGGGGAAGATGCGTTGGTTGCCTCTTTCGGTTGTAATATTATGGGCCTGTTCTCTTTACAGTGCCTCTGCGGATAACAATGGCGTAAAGAAGATGAAGATGCAGTTTGCCACTGGTCCACTTCTCAAATTCCAGATTTGTGTCTCCTGAGGATACAAGCGGGTGTTTGAGGAGTACACGCAGGTTTTGTACCAGCGGTACCCAGACATCCGCATAGAAGGAGAGAACTACCTTCCACTGCCTATCTACAGGCACATTGCTTCCTTTATGTCTATGTTTAAGCTGTTTTTAATTGGAGTGATCATTCTAGGCAAAGATCCATTTGCCCTATTTGGTATGCAGGCTCCAGGCATCTGGGTTTGGAGTCAGGAGAATAAGATATATGCCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAATCAATGTATGTCTACGGGTGCTTTTGAAATCACACTCAATGATGTTCCAGTTTGGTCCAAGCTGGAGTCAGGCCACCTGCCTTCCATGCAGCAACTAGTTCAAATTCTGGAGAATGAGATGAAGATGAACGTGCACATGGACACACTTCCACACCATCGCTCGTAACCTTGCCTCTGATTCACTGAATGGAGCCTAGAACCCCTCCACTTTTGTGGTGAAGCTCTCCTACGGTTGTGAGGTGACGTTTATGAAGGTTTGCGCTGAAAGTAGAGCCTCTGCTAGCGCACGCCCGATGTTCTGCGTTCTCCTCACCATGCCCCTCGGAGATGCACCACCTACAGACGCTGGTGCGGGATCCATGGCAACAACAGTGGCCATATAAATATGACTGCAGCCCATCTCTTGTGCAATAGCCATTTGTTTCTGGATATATGTTCACAAGAAATATGTAATAAATCTTTTCTATTTGAGTTCAGTTTGCTCAGTCAACAGAATTTATGATGGCATATATTCCTTTCATTTGATCCTAATGTATGACTAAATCCTGGTCTTTATGTTTTATTTAATAAGTTGATATGAGAAGCTTCTAACTTATACAGCTAATCCCCATCATGATAATTTAACATTTAAGTAACATTAATTATATTTCTGAGCCCTGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU26311 False 340 TUCP 0.44 3 1863892 1866921
TU26312 True 245 TUCP 0.37 2 1864690 1866921
TU26310 True 327 TUCP 0.43 2 1864608 1866921
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Expression

G23315 Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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G23315 Expression in each Bioproject

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G23315 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016175 selenot1a coding NC_007113.7 CM002886.2 9684305 ~ 9696283 (-)
rainbow trout (Oncorhynchus mykiss) G137772 NA non-coding NC_048566.1 CM023220.2 36905465 ~ 36905799 (+)
rainbow trout (Oncorhynchus mykiss) G2125560 LOC106599070 non-coding NC_048592.1 CM023246.2 29265047 ~ 29269424 (+)
eurasian perch (Perca fluviatilis) selenot1a selenot,LOC103365166 misc NC_053122.1 CM020919.1 24862996 ~ 24870087 (+)
eurasian perch (Perca fluviatilis) G138684 NA non-coding NC_053124.1 CM020921.1 36184037 ~ 36193304 (+)
mexican tetra (Astyanax mexicanus) G117383 pomgnt1 non-coding NC_035909.1 CM008312.1 41353509 ~ 41359883 (-)
mexican tetra (Astyanax mexicanus) G52655 NA non-coding NC_035902.1 CM008305.1 16622749 ~ 16677399 (-)