Gene
RNA
| Item | Value |
|---|---|
| gene id | G23870 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000003 |
| NCBI id | null |
| chromosome length | 2831192 |
| location | 2280660 ~ 2285641 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU26952 | True | 4962 | TUCP | 0.41 | 2 | 2280660 | 2285641 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000003_02175343_02190917 | ST6GALNAC5, ST6GALNAC5A | coding | upstream | 87340 | 2174790 ~ 2193320 (+) |
| CI01000003_02101903_02151773 | NA | coding | upstream | 128684 | 2100815 ~ 2151976 (+) |
| CI01000003_02070747_02072861 | NA | coding | upstream | 207271 | 2070747 ~ 2073389 (+) |
| CI01000003_01982406_01992219 | NA | coding | upstream | 287816 | 1982336 ~ 1992844 (+) |
| CI01000003_01969544_01973134 | COPE | coding | upstream | 307526 | 1969330 ~ 1973134 (+) |
| CI01000003_02422051_02446833 | FAM73A, MIGA1 | coding | downstream | 136410 | 2422051 ~ 2446837 (+) |
| CI01000003_02466819_02469433 | NA | coding | downstream | 181178 | 2466819 ~ 2469631 (+) |
| CI01000003_02510102_02514782 | NA | coding | downstream | 224461 | 2510102 ~ 2514969 (+) |
| CI01000003_02534151_02541110 | NA | coding | downstream | 248510 | 2534151 ~ 2541444 (+) |
| CI01000003_02551541_02556812 | NA | coding | downstream | 265900 | 2551541 ~ 2556836 (+) |
| G23789 | NA | non-coding | upstream | 73025 | 2207105 ~ 2207635 (+) |
| G23787 | NA | non-coding | upstream | 79724 | 2200694 ~ 2200936 (+) |
| G23771 | NA | non-coding | upstream | 140792 | 2139545 ~ 2139868 (+) |
| G23770 | NA | non-coding | upstream | 141116 | 2139288 ~ 2139544 (+) |
| G23356 | NA | non-coding | upstream | 232809 | 2029532 ~ 2047851 (+) |
| G23871 | NA | non-coding | downstream | 4705 | 2290346 ~ 2291021 (+) |
| G23893 | NA | non-coding | downstream | 167937 | 2453578 ~ 2454181 (+) |
| G23898 | NA | non-coding | downstream | 169368 | 2455009 ~ 2456866 (+) |
| G23913 | NA | non-coding | downstream | 175193 | 2460834 ~ 2461099 (+) |
| G23921 | NA | non-coding | downstream | 193446 | 2479087 ~ 2479378 (+) |
| CI01000003_01863421_01867859 | NA | other | upstream | 412523 | 1862854 ~ 1868137 (+) |
| G22578 | NA | other | upstream | 1355412 | 924803 ~ 925248 (+) |
| CI01000003_00390997_00406970 | WDR33 | other | upstream | 1885446 | 390622 ~ 408312 (+) |
| G22420 | NA | other | upstream | 2091221 | 179531 ~ 189439 (+) |
