LOC122334042


Basic Information

Item Value
gene id LOC122334042
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 1344551 ~ 1346837 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231931.1
ATGCAGTATTACTGTTGGATGTGCCTGCAGAGTTGGAAGTGGCAAAAAATTGAAGGAACAGTACAAATAGTCAAAGCTCTGGGAAGAGTAAGAGTCAGGGATTATAAAGAAGGACCAACACCAGGATTTCTACATGTGCTGTGTGAATGCAGAGAAGTTGTTGATTCTGCAAGCCTACCTGTAGAAGTAATACCTGCAGAGGGTGGGAAGCCTTGGAAGATAGTTGCAGCGGAAAAAGCTGAGTTGCCACCTCCTGGATTTGCTGAAAAACTGTCAAATCTGCTAATACAGGAAGGAAAGTCTGTCTCTGATCTACAAGCTATGTTCTCTTCACCCAGTTCCAATGCAGGGTCTCCAGAAGCTATAATCCGTGCGGTGGGTGAGCTGCTGGAAAAGACTTCGAAGCCTGTCAGTGATGGAAGTGCATACCGACGTTTGAGAGTTTTTTCAGGTGCTGTCCCTATTCCGGCAGGGGAAGAAGCCTTAGAGACCTGGATGGATCAAGCTAGAATGATGGTCATGGAGTGTGAATGCTCAGAGAAGGAGAAGCGCAGACGAATCGTTGAAAGTCTGAAGGGTTCAGCCCTGGATGTTGTGAAGTCTATCAGATTTGCTGATCCAGACGCACCTTCTCTTCAGTATCTTGAGGCTTTGGATGGGGCTTTTGGAACTCCTGAATCAGGAgaagatttatattttgctttcagGTTGTTAAGGCAGAATCCAGATGAAGCACTTTCTGATTTCTTGAAGAGAATGGAGAAATCTCTGACAAGGGTAGCGCAAAAAGGTGGGTTGCCTGGAAACAATGTTGATAGAACAAGAATTGAGCAGCTAATTCGAGGAGCTGTTGAATCTGACTTGTTGTTACTTCAGTTGCGTTTGAGAGAGCGACGAGAAAATCCACCTACCTTTTTAGCTCTCTTGAATGAGATCAGGGAGGCTGAAGGAAGCGAAGCTGCCAGATACAGTCTGGGTGTCACTTTCAAACCCGTCCCACGACCACGACAGAAACTTTCTAGTCTGGCTGCAGTGAGAGAATTAAAGGCTGAGATTCAAGAACTGCAGACCAAAGTAACTGAGGAACCTTCTAAAGTACCTGTGTCAGAGACAATGTTGGAGATAAAGCCAGTACCAAGAAGAAGAGAAGCTGACTCACCGGTAGACTTAGAAGTACAGTCACTAAAGAGGCAGGAGCAAAGACTAGAAGAGCAGCTGGTTTCACTGAGTGTCAGACAGTCCTCACAAATATCCAAAGAACCATCACCAGAGCAGGCTGTTGCTTCTGCAAAACCAAGATTTGAAGTGACTAAAGAAGATTACTTCTGCTACAAATGTGGGGAAGATGGCCACATTGCTCCAAGATGCAAGGCTACTGAGAATTACAGCCTGGTGATACAGAAGCTTGTGCGATCATTAAGAAAGACCCATAACAGTTGTACACAGAGGATAGTTATCCATCTGCCAAATTCCTCAAAGATTGAACTTAGCTCTCCAAAAAGGTATTCCGCTTCACCTAAATGTGCCCGATCGATCAAGAAGTACGTCGAAGGAATCCAGATAGCGCTCCTAATCGCCGAGTGGTTAGGAGTTCCTCTGGCATCGCGGGAGTGCCACGGAGACTGCCGACTGACCATAGCCTCGCCTGGACTGATCTGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231931.1 True 1659 mRNA 0.46 2 1344551 1346837

Neighbor

gene id symbol gene type direction distance location
psmd1 psmd1,LOC107566382,LOC107655280,LOC107698053 coding upstream 149122 1165329 ~ 1195429 (+)
LOC122334039 NA coding upstream 184729 1155275 ~ 1159822 (+)
LOC122334044 NA coding upstream 219958 1119707 ~ 1124593 (+)
mccc1 mccc1 coding upstream 543214 793163 ~ 801337 (+)
LOC122334053 lamp3,LOC107747931,LOC107566879,LOC107752186,LOC107736124,LOC107550665 coding upstream 551996 789232 ~ 792555 (+)
trnat-ugu_55 NA coding downstream 25538 1372375 ~ 1372448 (+)
trnar-ucu_54 NA coding downstream 26051 1372888 ~ 1372977 (+)
trnat-agu_69 NA coding downstream 26387 1373224 ~ 1373297 (+)
trnat-ugu_56 NA coding downstream 26846 1373683 ~ 1373756 (+)
trnat-ugu_57 NA coding downstream 27293 1374130 ~ 1374203 (+)
G183463 NA non-coding upstream 118460 1223268 ~ 1226091 (+)
G183466 NA non-coding upstream 179679 1164424 ~ 1164872 (+)
LOC122334055 NA non-coding upstream 196778 1146042 ~ 1147773 (+)
LOC122334033 NA non-coding upstream 209446 1133203 ~ 1135105 (+)
G183403 sox2,LOC107698049,LOC107550678,LOC107655276,LOC106584342 non-coding upstream 274419 1000056 ~ 1070132 (+)
G183477 NA other upstream 85891 1253951 ~ 1258660 (+)
LOC122334032 NA other upstream 198606 1127863 ~ 1145945 (+)
dnajc19 dnajc19,LOC107727073 other upstream 255661 1085804 ~ 1088890 (+)
G183354 NA other upstream 497837 845580 ~ 846714 (+)
G183316 LOC107566876,LOC107747932,LOC107655274 other upstream 557611 783284 ~ 786940 (+)

Expression


Co-expression Network