psmd1 (psmd1,LOC107566382,LOC107655280,LOC107698053)


Basic Information

Item Value
gene id psmd1
gene name psmd1,LOC107566382,LOC107655280,LOC107698053
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 1165329 ~ 1195429 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231952.1
ACGCTCATTGTCAGATGAGTTTGAGCCGCTGCTGCCGTGTAATAGCGGTCGATCGCTCCTCGCGCGCGCCGTTTCATTGAGAGCGAAGCAGGCTTTATTCCTCTTACCTCTGTTTGCGTGTTTAAATCGTTGTGCTGGAGGAGATCCGGTGACAGTCACGGACAGACATGATCACTTCAGCCGcTGGTATCATTTCCCTGCTGGATGAAGACGAGCCTCAGCTCAAGgAGTTTGCTCTACATAAACTAAACTCCATTGTCAATGACTTTTGGGCTGAGATTTCAGAGTCTGTAGACAAGATCGAGGTCCTGTATGAGGATGAGACGTTTTGTAGCAGAGAGTTTGCTGCCCTGGTGGCTTCTAAAGTGTTTTACCACCTCGGTGCTTTTGAGGAGTCTTTAAACTATGCCCTGGGCGCTGGAGACCTCTTCAACGTCAGTGACAACTCAGAATATGTGGAGACCATTATTGCCAAGTGTATCGATCATTACACCAAACTGCGAGTCGAGAACGCCGAGCTGCCAGAAGACGAGGAGAAGAAGAGCATCGATCCTCGTCTGGAGGGAATCGTCAACAAGATGTTCCAGCGCTGCTTGGGAGATCACATGTACAAGCAAGCCATCGGCATCGCCCTGGAGACCCGCCGCTTGGACATCTTCGAGAAAACCATCCTGGAATCTAGCGACATCGGTGGACTGCTGGCCTACAGCCTGAAGATCTGCATGTCCCTCATGCAGAACAAGAAGTTTCGTAACGATGTTCTCCGAGTCCTCGTCAAGCTGTACATGAACCTGGAGAAGCCTGACTTCATTAACGTCTGCCAGTGTCTGATTTTCCTCGACGACCCTCAAGCTGTGAGCGATATACTGGAGAAGCTTGTCAAGGAGGACAACCTCCTGATGGCCTATCAGATCTGCTTTGACCTGTATGAGAGCGCCAGCCAGCAGTTCCTGTCCTCTGTCATTCAGAACCTGCGCACCGTGGGCACACCCATCCCTGCTGTGCCCGGATCCACCAACACCGGCACTGTGCCCACCCAGGAGAAAGACAGTGATGCCATGGAGACGGAGGATAAAGCTGGCAGTTCTCCGGCCGGAAAAGCTGCGGATGCGAAGGGAGAGCCGAAAGACCAGAactcaaaaatgatcaaaatattaAGCGGTGAAATGGCCATCGAGCTTCACCTTCAGTTCCTCATTcgaaacaacaacacagacttGATGATCCTCAAAAACACAAAGGATGCGGTGCGAAATTCGGTGTGTCACACAGCGACGGTCATAGCAAATTCATTCATGCACACGGGGACAACGAGTGACCAGTTTCTACGAGAGAATTTGGAGTGGCTGGCAAGAGCAACTAACTGGGCCAAATTTACAGCAACAGCAAGTCTTGGTGTCATTCACAAGGGCCATGAAAAGGAAGCACTACAGTTAATGGCCACTTACCTGCCCAAAGACACCTCACCTGGGTCAGCCTATCAGGAAGGGGGAGGCCTTTATGCTCTCGGGCTGATCCATGCTAATCACGGAGGGGACATCATTGACTACCTTCTGAGCCAGCTGAAGAATGCCAGTAACGACATTGTTCGACACGGAGGCGCTCTGGGTCTCGGGTTAGCCGCCCTGGGCACCGCTCGCCAAGACGTATACGACCTGCTCAAGTCAAACCTCTATCAAGATGACGCAGTAACAGGAGAGGCGGCCGGTCTTGCTCTGGGGCTGGTGATGTTGGGCTCAAAGTCGGCCCAGGCCATCGAGGACATGGTGGGGTATGCTCAGGAGACCCAGCATGAGAAGATCCTGCGTGGACTGGCGGTCGGCATCGCAATGGTGATGTACGGCAGGATGGAAGAGGCCGATGCTCTGATTGAGAGTCTGTGTAGAGACAAGGACCCCATCCTGCGCCGCTCGGGAATGTACACAGTGGCCATGGCGTACTGCGGCTCCGGGAACAACAAAGCCATCCGACGACTGCTGCATGTGGCTGTAAGTGACGTGAACGACGATGTTCGGAGAGCTGCTGTGGAGTCCATTGGCTTCATCTTGTTCAGGACTCCAGAACAATGTCCCAGTGTGGTTTCCCTGCTGTCCGAGAGCTACAACCCTCACGTCCGCTGCGGCGCTGCGATGGCTCTGGGCATCTGTTGCGCTGGCACTGGGAACAAGGAAGCAATCAATCTCCTGGAGCCCATGACCAATGACCCGGTGAATTACGTAAGACAGGGCGCGCTGATCGCCTCGGCTTTGATCATGATCCAGCAGACGGAAGTCACCTGTCCGAAGGTCAACCAGTTTCGACAGCTCTACTCGAAGGTGATCAATGACAAGCACGATGATGTGATGGCCAAATTCGGGGCTATCCTGGCACAGGGCATCCTGGATGCAGGTGGTCGTAACGTGACGATCTCTCTGCAGTCGCGCACAGGCCACACCCACATGCCATCTGTGGTGGGTCTCTTGGTCTTCACCCAGTTTTGGTTCTGGTTCCCGCTctctcacttcctgtctctggCCTTCACGCCCACAGCTATCATCGGCCTCAACAAAGATCTGAAGATGCCGAAGGTGCAGTATCGATCCAACTGCAAACCCTCCACCTTTGCCTACCCTCCACCCTTGGAAGTGCCAAAGgagaaggaaaaagagaagGTTTCCACCGCCGTTCTGTCCATCACGGCTAAAGCcaagaagaaggagaaggaaaaggagaagaaagagaaggaagagGAAAAGATGGAAGTGGAAACACAGGCAGAAGcagataaagagaaaaaagacgaggagaaggagaaagagaaggagaaggagaaagagaaagagaaagaaaaggagaaggaaaaggaaaaggagaaggagaaggagaaagaaaaagaaaaagaaaagaaaaaagagccAGAGCCAAACTTCCAGATGTTGGAGAACCCAGCGCGTGTCATGCCCGCCCAGCTCAAGGTCCTTTCCATGCCTGACAGCTGCAGATACCAGCCCTTCAAACCTTTACACACTGGTGGCATCATCATCTTGAAAGATACcagtgaggaagaggaggagcttGTAGAGCCTGTGTCTGCTCATGGCCCTAAGATTGAGGAGGAAGAACAGGAGCCTGAGGCCCCTGAACCCTTCGAATACATAGACGAGTGAAATACGCCACTTTACAGgtgGTGTTATGAATTCTGTGTGTTCACAGCATGCACCGCTACACGTCTACTCAAAATGCCCAccccttttccttttttacgtTATTTCCTCCACTTGGCCTATCGTGGTCACTTGAGGGATGTTTTACACAATGGTTTTCAgtcattacaataaaatatatatgttgaaCATGA

Function

symbol description
psmd1 Predicted to enable enzyme regulator activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within regulation of protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in nucleus and proteasome storage granule. Orthologous to human PSMD1 (proteasome 26S subunit, non-ATPase 1).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 isoform X3

GO: NA

KEGG:

id description
K03032 PSMD1, RPN2; 26S proteasome regulatory subunit N2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231952.1 True 3337 mRNA 0.52 25 1165329 1195429

Neighbor

gene id symbol gene type direction distance location
LOC122334039 NA coding upstream 5507 1155275 ~ 1159822 (+)
LOC122334044 NA coding upstream 40736 1119707 ~ 1124593 (+)
mccc1 mccc1 coding upstream 363992 793163 ~ 801337 (+)
LOC122334053 lamp3,LOC107747931,LOC107566879,LOC107752186,LOC107736124,LOC107550665 coding upstream 372774 789232 ~ 792555 (+)
trnag-ucc_28 NA coding upstream 407034 758224 ~ 758295 (+)
LOC122334042 NA coding downstream 149122 1344551 ~ 1346837 (+)
trnat-ugu_55 NA coding downstream 176946 1372375 ~ 1372448 (+)
trnar-ucu_54 NA coding downstream 177459 1372888 ~ 1372977 (+)
trnat-agu_69 NA coding downstream 177795 1373224 ~ 1373297 (+)
trnat-ugu_56 NA coding downstream 178254 1373683 ~ 1373756 (+)
G183466 NA non-coding upstream 457 1164424 ~ 1164872 (+)
LOC122334055 NA non-coding upstream 17556 1146042 ~ 1147773 (+)
LOC122334033 NA non-coding upstream 30224 1133203 ~ 1135105 (+)
G183403 sox2,LOC107698049,LOC107550678,LOC107655276,LOC106584342 non-coding upstream 95197 1000056 ~ 1070132 (+)
G183404 NA non-coding upstream 142170 1022147 ~ 1023159 (+)
G183463 NA non-coding downstream 27839 1223268 ~ 1226091 (+)
LOC122334032 NA other upstream 19384 1127863 ~ 1145945 (+)
dnajc19 dnajc19,LOC107727073 other upstream 76439 1085804 ~ 1088890 (+)
G183354 NA other upstream 318615 845580 ~ 846714 (+)
G183316 LOC107566876,LOC107747932,LOC107655274 other upstream 378389 783284 ~ 786940 (+)
G183328 NA other upstream 413277 749860 ~ 752052 (+)
G183477 NA other downstream 58522 1253951 ~ 1258660 (+)

Expression


Co-expression Network