LOC122334055


Basic Information

Item Value
gene id LOC122334055
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048114.1
NCBI id JAEQBD010000459.1
chromosome length 1423374
location 1146042 ~ 1147773 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006248714.1
AagctaacaacaacaacaactgccccaacatctaccacaacaactccgccaacatctaccactcttaCAACAACTGTGCCAATATCTACCATTCTTTTAACAACATCTGTATCATCAACATTGATATCAACTGCATTAACATCATCTACCTCTTCACTGACAACAACTCAACCAGCAAGTCAGTCAACAGCATTATCTCCAGAAGCTGTCCTGCGAAACATGACAGCAGTTGCGTacattaatttcaaaatgaGATCCTTCGTTGAGCTGAGGAATGATGAAATCGTTACATATCTTGAAAAGTTTTTCAAGTACACAAACAGCAGTGGGAACATCAGGATTACCGTGAGGAAATCAAAAAAACTATTGACTTGAGGATCTGACGCGGAAAGCTGCAGTCTTTGAACGAAACGATCAGGCAGtcaactaaaaaaatgtttttcatttcatgtgcATCGTTGCTTCAGATTAAACGTTTTCTGCTCCTTCAGTGTGAACGATTAAAAGCTCCCGTATAACATCTCAAATTTGAAGAACGCCAGAACGGGTTGCATCCATCTTGCTAGATATTAGCTAGGTAAGTCTTTCGAGACAATAGGCAAAAAATTTGTTAGTGTAAATAGGCTACAGATTTATAAGTGATAtaacgttttaaataaatgctaatgtaGTTACGGTGGTTGAATCACAGGCGATCAggttttcagtttgtttctgaTGTTCCTCATTGATTGATTCACTTTTTCACACCTGCTGTTCGTTTCTTTTACGTCATCTTGATTATTTATTGTCAAATCTTTGTTATTTCTCATTGCTTAGGAGCTGGTTGCTctgttcttgtttttaatttcttattttttgtgaataaaagtaCTTCTGCATTAGATCCCCTTTGTGACATCTTTAATTTTTGAGATTTAACCCATAAACTCCAGAAACACCAGATGTGTGCACGTTATTTGGAAGACATTAGTATGTAGTTATGAAGTCatgaagtatttaaaatatctggTAAATGCTCATCAATGTTGAAATGCCTTGGCAGGTTACAAAATGCTGATCAACCGGTGATGAAAACTAAAACTCTTATGAAAAAGCATAAGtatcagatttgtttttaaaccaatttgacagaaaaatgatttaaattttgCAGGGCTTGCTTTATTTCTAAGCGTAACCTC

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006248714.1 True 1184 lncRNA 0.36 3 1146042 1147773

Neighbor

gene id symbol gene type direction distance location
LOC122334044 NA coding upstream 21449 1119707 ~ 1124593 (+)
mccc1 mccc1 coding upstream 344705 793163 ~ 801337 (+)
LOC122334053 lamp3,LOC107747931,LOC107566879,LOC107752186,LOC107736124,LOC107550665 coding upstream 353487 789232 ~ 792555 (+)
trnag-ucc_28 NA coding upstream 387747 758224 ~ 758295 (+)
LOC122334017 LOC107577399 coding upstream 430957 699245 ~ 715085 (+)
LOC122334039 NA coding downstream 7502 1155275 ~ 1159822 (+)
psmd1 psmd1,LOC107566382,LOC107655280,LOC107698053 coding downstream 17556 1165329 ~ 1195429 (+)
LOC122334042 NA coding downstream 196778 1344551 ~ 1346837 (+)
trnat-ugu_55 NA coding downstream 224602 1372375 ~ 1372448 (+)
trnar-ucu_54 NA coding downstream 225115 1372888 ~ 1372977 (+)
LOC122334033 NA non-coding upstream 10937 1133203 ~ 1135105 (+)
G183403 sox2,LOC107698049,LOC107550678,LOC107655276,LOC106584342 non-coding upstream 75910 1000056 ~ 1070132 (+)
G183404 NA non-coding upstream 122883 1022147 ~ 1023159 (+)
G183342 NA non-coding upstream 247136 804512 ~ 898906 (+)
G183338 NA non-coding upstream 358222 787610 ~ 787820 (+)
G183466 NA non-coding downstream 16651 1164424 ~ 1164872 (+)
G183463 NA non-coding downstream 75495 1223268 ~ 1226091 (+)
LOC122334032 NA other upstream 97 1127863 ~ 1145945 (+)
dnajc19 dnajc19,LOC107727073 other upstream 57152 1085804 ~ 1088890 (+)
G183354 NA other upstream 299328 845580 ~ 846714 (+)
G183316 LOC107566876,LOC107747932,LOC107655274 other upstream 359102 783284 ~ 786940 (+)
G183328 NA other upstream 393990 749860 ~ 752052 (+)
G183477 NA other downstream 106178 1253951 ~ 1258660 (+)

Expression


Co-expression Network