G185432 (cfi,LOC107737955,LOC107737970)


Basic Information

Item Value
gene id G185432
gene name cfi,LOC107737955,LOC107737970
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 303354 ~ 310514 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU275183
AGGACCAAACGTGTAATTGCCCGATAACCAGCATTTTAATAGCAACATACAAATAGCAAATTTAGCAACATCAGCCGGCAAACGTGAACTGATCTGTTCTTCTTTCACTGGTTAAATTTGGTAACGGCCGCCCAGCCCGTGTGGGAGCGGATCCAGTCGAAATAATGCGCCACTTTGGTGTAGACACCAGGATGATTGGCCTCGCCACACTTGTCACCCCAGCTCACTATTCCCCAGACATACGACAGACCGGACGCGTCCGTGCACACCAGCGGCCCTCCGGAGTCGCCCTGACACGAGTCCACCTTCCCCTCCAGATCACCTGGAACTGTTGGGTGGCCCAGGGAATGCAGACGGCTCGGACCGCAGGATTGTCCTCCATGCACTTGTCTGAGAGATTGAGCTCCTTCAGCTGCACCAAAGCGATGTCGTTGGCGTACGTTTGCGCGTCATATCCGTGATGGATGATGATGTTCTTCACCGGGATGCTGTCGGTGGTCGACTGCTTGCGATGCTTCTTCCAGAGAGAGAACTTGACTCGGAAGGACTTCGGTAAGGCCTCTTCCCCTCCTACTAAGCGCTTCCTGCGCCGACTGGAAGTTGCTTCGTCCGCTTGTTTGTACACATAATCTTTATTGGGAATGCCACACTCCAGCTGGCTCTCAGCAGACGAGCGTATTTCTTTAATTTCTGGAACAGCAGGATGGAGGGAGTGTGAGCAGATGTTGATTCAGCTGCGTGAATCAAACGAAACACAGCAAGCCTGAACCTCTAGACCCTGTGTATTCGCTCCTACTTGAAACGTCTACAGTGGTTTGTGAAGTTTGCTCTCACCTGACATTGGATCAGTAAAAAGCCCTGGTGTTTCTTCTATTTTCGGACTGAGTTCTGTGACAAAAAGGAAAGAAcggaaatgcatttattgtgtaaCAAAACTACTGATTTGTTTAAAGTTCtttcttaaaatgattaaaattctttactgttttctctctctctcatattttactgtaatacatgTCAATACATTCTTTACGGTTTTCTCTCTcgtattttactttaatacattatttactgttttctctctctctcgtattttactttaatacATGTTAATACATTCTTTacagttttttctctctctcatattttactgtaatacatgttaatacattctttactgtttttttctctctctcatattttactgtaatacattttaatacattctttactgttttttctctctctcatattttactgtaatacatgTTAATACATTCTTTACTGTTTTTTCCCTCTAtcgtattttactgtaatacATGTTAATACATTCTTTacagttttttctctctcgtattttactgtaatacatatgttaatacattatttactgtattttctcattctttcaCTGATAAAACTGGCGTAATGAAGGCACGATGAATGAAAGTTACCAAAAAGTTAGTTCAAGCATTGTGGGAACAAATATCTCAATCACAGATGGTTGTATTTTTAATCTCAGGATGGGAGAGCTGAAAAACaggatgatttaaaatgtaaaagtttagattttgggtttgtgttttttgcaatttaatcgGGAACGTTTTCTCCCCTCAGGAAAAATGAGCCTGAATAGGACCTTCACCGAACCTGAAGAATACGTGTCTGCTTTTAGTAACCGAATCCTGAATAAGAAATCTCAATTAAATTCACTGACCATTGATCTCGTCTTCTCCTCCCAGACAGTCCCTGATTCCATCTTTGATGGCGTGTTGGGGAATACAGACACCCGTTTCACAGAAGAACGCCCCGTCTCGACATTTGGCAGCACATCTCATCACTGTTGTCTCCACAGTCATCAACACCATCGCAGGTTTTTTCACGCTGTATATGTTTCCCGTTCACACAGAGGAAGTACTGAGGTCCGTCTACTCCGAGAAAACCCATGAGTGTGAGTGAGCGAAGTGTAAACGCTACACGTGAGAGATTAACACATCTGAGAAGAAAAGGCACCTGGAAGTCCCTCGTAACACTTTAAAGTGGCCACCCCAGACTCTGTGATTGGCTGTCGATCGTAGATCGTGCACTCGGCCAATGAGAGCTCAGATCCCGTGCAGCGAACCTTCATACACTCTTCACCGGCAGACTCGTATGAAACGTTAGATGCCGTCTCTGCTCCTTGTCGACTCCTTTAACGCTTCGGCAAACCACGTTTGCTGCGGCAATATCCCAGCCGTCACCACATACCGGCATTTTCCCAAACCTTGTGGTTATCTCCACCACATCAGAGACCGTCGCAAACACCTTGTCTTGGTTCTGCAGGCGATGGCGTTGGCCTGACACATGGAGTAATACACGGCTCCGTCCAGAGTACAGGCGCTCGTTTTCTGCCGAGGACATTTGTACGGCATCTTACAGACACACTGTCCCGCGATGCATCGCCTCCACGGAGGACAGAAGACTTTAGAGCAGGACGAGCGAGTGTATTTCTCTTTCAGACACTGGGCCGGACCCAAGAAGTCCTCATCGGGGTCTTTTGGGGGTTCAGACTGTGAGTCTGTGGTCCGTGGTTCAGGGTTCACAACATCTGACTCTGTTCGGGTGGACTCTTGCTCTGAGTCTTTGACTGGATCTGGTTTTATTGTGCTCCCCGAGTCTGCATCACCGTTTTCAGCTGAAGTTGGTAAACCTGGCTTCAGGAGCAGATTTACTTGTTGTTGTTCCTGCAGACTCTAACGGGAGGAAATC

Function

symbol description
cfi Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Acts upstream of or within retinal blood vessel morphogenesis. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Kuhnt-Junius degeneration; age related macular degeneration 13; atypical hemolytic-uremic syndrome; complement factor I deficiency; and macular degeneration. Orthologous to human CFI (complement factor I).

NR:

description
PREDICTED: complement factor I-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU275183 True 2754 lncRNA 0.45 9 303354 310514

Neighbor

gene id symbol gene type direction distance location
sgms2b LOC107673184,LOC107750186,LOC107702172,LOC107568965,LOC107568955,LOC107737971,LOC107564763 coding upstream 8119 287562 ~ 295235 (+)
aimp1b NA coding upstream 18250 278394 ~ 285104 (+)
LOC122334538 LOC107750194,LOC101884488,LOC107564762,LOC107708036 coding upstream 28484 266281 ~ 274870 (+)
ddx58 ddx58 coding upstream 45541 245293 ~ 257813 (+)
toporsb LOC107750189,LOC107673181,LOC107575337,LOC107702170,LOC107737957 coding upstream 58175 237261 ~ 245179 (+)
LOC122334545 ccdc171 coding downstream 31174 341688 ~ 362034 (+)
LOC122334546 NA coding downstream 51388 361902 ~ 371295 (+)
si:ch73-168d20.1 LOC107730363,LOC107564766,LOC107673183 coding downstream 60913 371427 ~ 387407 (+)
sh3gl2b sh3gl2,LOC108276379 coding downstream 77680 388194 ~ 406228 (+)
LOC122334569 NA coding downstream 120603 431117 ~ 434925 (+)
G185407 LOC107673165,LOC107750190,LOC100330136,LOC107568966,LOC107702148 non-coding upstream 40255 202042 ~ 263099 (+)
G185363 NA non-coding upstream 136035 165516 ~ 167319 (+)
G185345 NA non-coding upstream 145157 156944 ~ 158197 (+)
G185352 NA non-coding upstream 164718 137928 ~ 138636 (+)
G185333 NA non-coding upstream 167096 134637 ~ 136258 (+)
G185443 NA non-coding downstream 74023 384537 ~ 385010 (+)
G185446 NA non-coding downstream 96946 407460 ~ 409065 (+)
G185457 NA non-coding downstream 161757 472271 ~ 531021 (+)
G185405 NA non-coding downstream 231115 541629 ~ 544613 (+)
LOC122334568 NA non-coding downstream 231815 542329 ~ 545868 (+)
ctc1 ctc1,LOC107580117 other downstream 103231 413745 ~ 427951 (+)
plod3 plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175 other downstream 227841 538355 ~ 590185 (+)
G185478 si:ch73-269m23.5,LOC107681649,LOC107567120 other downstream 275005 585519 ~ 586595 (+)

Expression


Co-expression Network