ctc1 (ctc1,LOC107580117)


Basic Information

Item Value
gene id ctc1
gene name ctc1,LOC107580117
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 413745 ~ 427951 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU275216
CAGAAGAAGCGCGCGAGTCCCGGTGTTTATGTTTCATATTTGCGCTCGTATTGttataaatacaacaaatggGACGCTGACGGGGGACTGATCGTGTCCGGAAGTATGGAGGAGTTTCTGAAGCACTTTAAAAACCACAGCAGAGCGATGGTTATAAGCGACAGCTAAAGGAAACCCCAAATTCAGCTTCTCAGAAACATTAGAATATCACTTGAGACCGAGACCAAGAAAGGGTTTTTGGAGATATGGAGACATGGCCCTCAGCTCTTCTTCATGGTTGGGTCTGGAGTATCTCTTCTCCCTGGATTTCCTTCGGGGTTAAGCTCAGGCCGATGAAGAAGAGGGACAGCATGCTCCTTAAACCAGGGACCGAGGATGAAATCTTCATCTCCATAAGGTTGGTCAGCCGCAGCATGAAGCATGAAGCGCTCGAAAACCTCCCGCTATACGGCTGcgttgacctttgacctcagagAACACAGCAGATGACACGAACCCCAAACCATCAGTGACTGTGGACCTCAAGCAACGTGAGACTCTTCCTCCAGACCCTGATGTCCAGCAAATGCTAAATTGACTTCATCAGAGAACATTTCTCTGGATCGCTCAGCGGCAGTCCAGTCCTGTTTGCTTCTGACGCTGTGTCTCGACTCGAGGGCCGGGCGGCTGAGACCCATGTCTTGTTCTTGAAGCAGTCCCCTCTCTGTGAATCTCctccacatttttgaatgggttttgtcTCACGatcttttccttcccttctCCTCTCTGTTGATGTTCTTGGACACAGAGCTCTGAACCTCTTTTGTGTCTCGTCCTCCTCGTTCAAGGTGTCAAAGGTCATCACCTCGTGATCCTGTATCTACAGAACCAGAGCGAGAGAGCATTTAAAGGCCAGGTGTTTTGAGTTCGTCGTCTGATCCGAGCGTGTCTTCAGTATTCAgccttttcacaatattctcATTTTCTgagatgctgtatttttttcatcagttgTCTT
>XM_043232573.1
TCACACACGCGAGACGCCGGCAGAAGAAGCGCGCGAGTCCCGGTGTTTATGTTTCATATTTGCGCTCGTATTGttataaatacaacaaatggGACGCTGACGGGGGACTGATCGTGTCCGGAAGTATGGAGGAGTTTCTGAAGCACTTTAAAAACCACAGCAGAGCGgagcaGCTCTGGCTCTCTCAGGTGTTCGAGGCGGTGCAGCAGCAGCTCTTTCCTCTCCTCGATGCGTCCCGGGGTCTGTCTGTGTCTGGTCTGTCTCTGAGCGTCGTGTCGAAGGTTCAGACGGCCTTCAGCTCCCTCAGCTCTGACTTACCTGTCAGCTACAGGTTCGTGTCGGTGTCGGAGCTGATCCGTGATCAGAGAACCGCCTGCTGCAGCAGCCTCAgctggagctccgcccactaccgGGAACAAGCCAGGGGGGCGGAGCTAAAGCTCCCCGCTCACAAAGCCATTCCTAGGGACAACctgcttctgattggctgtctgtGTGACGGACGGGCCGTGGGGACCAGTGAGGGCGTCTGGAGGGTTAGAGACGCCGGAGGGAGCCTAGCGTGTGCGATGCTGAAGTCCTCTAGTCTGTGGCTGGGGAGACTGATGCTGTTTCCCTCGTGGAACTACATCCCCCATGATGCACCTGGGCTAGGTTACCTGGAGCTGCTGGAGCCTCCGGTGTGTGTGACTCTCGAGGCCATGGCCTTTGACCCCGGAGGAGCCCTGAGTGAGGTCATGAGCGTGATGCGGGCGGCTGAGCTTCTCAGACAGAGgtgtggggatcaggtgtgtgtgtgtgtcagcggtCAGGTCAGTGTGGTGTGTCCTCTGCTGGTGATTCGTGGGAAGCGGTTCTTCTGTCTGGTCCTCAGTGAAGAAGGGTCCTCAGTTCCTGTGTTCATCACAGAAGCCAAGCATCAGTACTggaggcagtgtgtgtgtgtcggccGGAGTGTGTGTATCTcgtctctgcgtgtgtgttcaCTTCAGGGGATGCAGGGCCAGCGTGTGCTGACAGACAGCTGTCAATCACGCCTCCATCCGCACCTGCAGAACCGGGAGAACTCAGAGGATCcagacacacactctgtcaCTGATGACACACACTCAGCCGACACACACTCCGCTGACACACACTCCGCTGACACACACTCCTCTGACACACACTCCGCTGACACACACTCCGCTGACACACACTCCGCTGACACACACtccgctgacacacacacagactccatCAATGATGACACACACTCCGCTGACACACACTCCGCTGACACACACTCCGCTGACACACACTCCGCTGACACACACTCCTCTGACACACACTCCGCTGACACACACTCCGCTGACACACACtccgctgacacacacacagactccatCAATGATGACACACTCCCCGCTGACACACACTCCGCTGACACACACtccgctgacacacacacagactccgTCACCGCTGACACACACTCCACCGACGCAGTGTTCAGGTCCGGTTCTGCAGTCAGAGTCAAGCGTTCCAAGCTCATCAGCTTTAagGGTACGGTCACGAAGATCTTGAATGCAGAGGCGGGGCTTTATGAGATTGACGGACAGGTGGGGCTTTGTCTGGCCTATCAGCCGGCTCAGAAATGGGGCGGCGGCTTGAGGCCGGGGGCGGAGATTCAGCTTCACAATGTTCACTTCATATACCGGTCTTCCCCGTTTGCTCCGAGTGTGgttctgtgtgcgtgtctgcgCTCCAGCCTGCAGATCACTTCCTTCAGCCGCCTGAGGTCAAAGGTGGAGGTGTCGGGGTCACACGGGCCGCTGCAGCGCCTCCTGCTGGAGAAGAATCTGGGCCCGTCGCAGTATCTCTGGCTCTGCTACTGTCAGGACGCGGTCGCTGAGAGgctgTGTCCTCGCTGGGTGAGAGCTGAGCGGGTGTGTGTGGTAGCTGAGCGGCTGCTGGACGTCGTGTGTGACCCTGAACATAAGACACAAAAGAAGAGAGACATTTACAGAGAGATGATACAGAAGCCACACCAGTGCCCTGTTACTATGTTCTGTGTGTGGTGGCCGTCTACGGCGCTGTGGTCTCTGAAGCAGCTCTCTGATTGGATGAGGCACGAGGTGTGGTCTTCGCTCTCGCTGGCGTCTCTCCTGCCACCGTCTGCGGCTCACATGACTGCGCTGGAGCTGAACTCGGCTCTGTCCTGGTCCGTGCACACTGTCCAACTGACGGACGTGGCCCCGGAGCCGCTGCTGTTACTGGGGGTCCTGGAGCTGGACCCGACCCGCGCCACGCTGCAGCTCAGagaccagacacacacactcgactGCTTGTGTGTCTCAGAAGACAGAACCGCACATATCAGCACGGCCTGGCAAGGTTGTCTAGTGTGTGTGCAGCGGTGTACGTTAGTCATGGAGAGGTTCATGAAATCGCAATTTCCTTCCTGGAAACACCTGGATCAGCCGAGTTACATCACACACAAAGACTGcaggttgTATCTCCAGCTGTGTGTGGatgatctgatcatcatcagtCCGTCTGCTGCCATGAGCCGCTGTCTGATGGAGGACAGGCAGGCGGGCCGAGCGAGCGCTAAGCGACCTCCGACCCCAGTGGCGTGTGTCAGTGTGCTGCTCAGACTGGAGTGGAAGCAGGCCGTGCTGCTCAGACCGGAGCCAGGCTTCGTCTGCGGGGCCGTGTGTCTGGGAGACGCTCAGCGCTGGAGCCACGACCCCAAAAACACCCGGCccctggagagagagagactcggAGACGCCCAGCAGATTGAGCTGCACTTCACGGGTTCTTGTGTTCGCTGGTTCCCCGTCCTTCATCCTGGATGTGTGTACAGATTAATCGCACGCAACACtgaggatGTGAGTCTCTTAAAAGCCAAGGGGGTTTTAGCGAGGGGCGGAGTCACACAGCTCAGTAGCCCCGCCCTCCTGTTGCAGCCACAGTGGCGCATTCACACAATCACTGAAGAGCTGCCggacacacagTCAGGTGTTCCTGAGTTCCTGAGCGTGTCTGAAGTTCTTCTCAGCAGCTCCGCCCCCGAGATCGTCTCCTTCCGCGGAGTCATCACTCAGCGAATCACATTACAGGAGGACAGCGGCTCTAGACCCAGGATCCAATCGCAGACGGCGGCGGAAGAGCAGGACGTCCGGCTGCGTTTGACCGTCCGGGACGCCGAGCGGCCTGGTCACGTGATCGACGTGTATGTGGATCTGTCGTGGGGTCCGTACACACTCGGCCTGATCCCCGGGGCCGCGCTTTCAGTCCGGCACGTCCAGCGCAAGCTCTCCAAagtgtGTAACGTGTACTGCCGCTCTCTGCCcgtcagctgtgtgtgtgtcactgatCTGACGTCGGTGTGTTCGAGGTCAGGTGTGGCTCCGCCTCTTCCTCCCATGATGCTCTTGGGCGAGTGGGCGGCGAGCCGGACGCAGCGCTGTGTGCTGGctcaggtcaaaggtcacgtggtgtgtgtgttgtctctgCGGCTGCAGTGGACGTGTTCTCTCTGCGGGAGCATCTTCGGACAGGCGTCTTGTGGCCGAACTCACCCGCCGTGTGACTCCACCAGCGCAGTGTTTCAGGCCGAGGccaaggtgGTGCTGGAGGACGGCTCCGCTGACGCTCACGTCTGGTTCTCGTCTGACTCTGTCTGTGATCTGCTGAAGCTGAATGCGGGTCAGTGGGAGGGACTTCAGAGACACGtcaaggtcaaaggtcacgtgAAGGTGTACACACGCGGACGCAGCATGacgTGTGACGAGGACCCTGACGATGTTTTAGTTCAGTATCTGAGCTGTCTGTGCTCCAGCGCCGCTGTGTGTCGTCAGATCCACCTCACCTGCAGACTGAGAGCTCAGAgaacagggAAATCTCAGCTAAAGAAAGTTCATCGCGGTCAAACAGAATTCATCTGCAAATTCCCACCTGCACTACAGttacagtgcacacacatacacacacatacaagcacAGTCAGTCACAcatgctgaacacacacacacacacacacacacacacagacacgcacacacacacagacacgcacacacacacaga

Function

symbol description
ctc1 Predicted to enable single-stranded DNA binding activity and telomeric DNA binding activity. Predicted to be involved in positive regulation of DNA replication and telomere maintenance via telomere lengthening. Predicted to be located in chromosome, telomeric region and nucleus. Predicted to be part of CST complex. Orthologous to human CTC1 (CST telomere replication complex component 1).

NR:

description
CST complex subunit CTC1

GO:

id name namespace
GO:0000781 chromosome, telomeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K23311 CTC1; CST complex subunit CTC1

RNA

RNA id representative length rna type GC content exon number start site end site
TU275216 False 1000 lncRNA 0.48 2 413765 415340
XM_043232573.1 True 4077 mRNA 0.58 23 413745 427951

Neighbor

gene id symbol gene type direction distance location
sh3gl2b sh3gl2,LOC108276379 coding upstream 7517 388194 ~ 406228 (+)
si:ch73-168d20.1 LOC107730363,LOC107564766,LOC107673183 coding upstream 26338 371427 ~ 387407 (+)
LOC122334546 NA coding upstream 42450 361902 ~ 371295 (+)
LOC122334545 ccdc171 coding upstream 51711 341688 ~ 362034 (+)
sgms2b LOC107673184,LOC107750186,LOC107702172,LOC107568965,LOC107568955,LOC107737971,LOC107564763 coding upstream 118510 287562 ~ 295235 (+)
LOC122334569 NA coding downstream 3166 431117 ~ 434925 (+)
tfr2 tfr2,LOC107730361,LOC107673155,LOC107676171,LOC107660828,LOC107709213 coding downstream 23336 451287 ~ 464201 (+)
LOC122334567 NA coding downstream 106209 534160 ~ 542013 (+)
G185446 NA non-coding upstream 4680 407460 ~ 409065 (+)
G185443 NA non-coding upstream 28735 384537 ~ 385010 (+)
G185432 cfi,LOC107737955,LOC107737970 non-coding upstream 103231 303354 ~ 310514 (+)
G185407 LOC107673165,LOC107750190,LOC100330136,LOC107568966,LOC107702148 non-coding upstream 150646 202042 ~ 263099 (+)
G185363 NA non-coding upstream 246426 165516 ~ 167319 (+)
G185457 NA non-coding downstream 44320 472271 ~ 531021 (+)
G185405 NA non-coding downstream 113678 541629 ~ 544613 (+)
LOC122334568 NA non-coding downstream 114378 542329 ~ 545868 (+)
LOC122334532 NA non-coding downstream 154101 582052 ~ 593003 (+)
G185402 NA non-coding downstream 162364 590315 ~ 600124 (+)
plod3 plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175 other downstream 110404 538355 ~ 590185 (+)
G185478 si:ch73-269m23.5,LOC107681649,LOC107567120 other downstream 157568 585519 ~ 586595 (+)

Expression


Co-expression Network