LOC122334532


Basic Information

Item Value
gene id LOC122334532
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 582052 ~ 593003 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU275258
ATGAGACTTGAGCTGAACCGAGCTGAACACTTTCTCACAGCGACCGGATCAAACATACAGCAACTAATAACTCTATAGTAGCCTTTAGTTGAGAAGACCCGCTTCTGTCCATCTTTTAAGTCTAGAAATCTATAACTTGAGTTGATCAGGACGGCGCATGCTTGGTCAGCGATGGAGGAAAGCAAGACTGATCACGTAACCCCGCCCACAACCCCAAACAAAGCCACGCCCTCTCCGCCAAGGTCCGATGAACGGCCGATGGGTTTGAGCAGCCCGGAGTTACTAAAAGAACTGAAACAACCGCACGCGCTCAAACACGTCCCGCTCACAAGGGACTGACCACGGTCTTCTGCGGACGAGGACGACAGAATCAGGAGGAGAGTCAGACAAAAAGCCTGCACTGAGAGGCCGGCGGTCACAGTGACCGTTCGGCGGGGATTACAGCTGATTGGCCGTTTGAGCCGCCTGTCAGGGATAAGCCCCGCCCCCTGGGTGGAGCTGCTCTGGTTATGAGGATCTTCCACATGTTTGTGTGCGAGTGTGAACGCAGTCTGAGGtttcagcagtgtgtgtgtgtcatgtcagatatgaaataaaatgatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatttgaattgaaattaaTGGAAAAGTCTACTGAATTGCATTTGAGAGGAGTTTAACAGTAATACAGGAGAAGTTTGATTAGTAGAACAGACCGCTTCTGTATGTGTGTCACAACCAATAAACTTCATCATAATTTGGAATAATTTTGTCAATTTATTCTCAGATTAGACCCAATTCTTTTAGTTCAACACTGTCTAGACAATCAACAACCGTCAAACAGATTctaataaagatatatttttatagaatggatcgtttaatataatatacaatatattttgtatgtataagtaaaactatatatgtgtgtgtgtgtgtgtgtgccagctTTCTAAATGTTAAGAGACGTGTTTGCTTcaaatggtttattttcatttaatataatgaaatataaatgaaattgtCATTTCTACAGggaacatttcaaaaacatttaatatcatGCAATGTTTTAGCattggtgttatttttttaattctagacttttttccatttttatttattttttaagcaattttgtctgccatttttattcatttttaaatgtctatagtcttttattgtttattttttattattattagttattttagtactttgaCTTAAACTGAGCCAAAatggcaaatataaaaaatataattaaagttacctgaaataaaatgaaaatttttctctttttttaattaccattatggtttagtttaacttttttttttaatttataggtaaaatgaattgtattattaatttatagcTATTATCAACAGCAATAACCCTGGTTTCTGGAAGCCCTCCACGTTGTGTGTTTTCGGACTCACGTCAGATTGAGGTATTTCCGTGTCATGTTTGCGCAGCGGTTCAAAGGTCACGCAGCTCTGAGCTGGTCTCTGATCTCCAGGAGTGTTAGCGAGCGTGTCGGAGGACGAGAGAATGCCATCTCTTCTGCGTCGCTGTGTGCTGAGCGCGCTCCTGATGAGTCTGCTGCTGTTCCTCAGCTCTCTGTGGCTGCCTCAAGGAAGTGTTCAGACCTGTGAGCAGTCGTGGAGGCCCTGTCTAAGCG
>TU275259
ATGAGACTTGAGCTGAACCGAGCTGAACACTTTCTCACAGCGACCGGATCAAACATACAGCAACTAATAACTCTATAGTAGCCTTTAGTTGAGAAGACCCGCTTCTGTCCATCTTTTAAGTCTAGAAATCTATAACTTGAGTTGATCAGGACGGCGCATGCTTGGTCAGCGATGGAGGAAAGCAAGACTGATCACGTAACCCCGCCCACAACCCCAAACAAAGCCACGCCCTCTCCGCCAAGGTCCGATGAACGGCCGATGGGTTTGAGCAGCCCGGAGTTACTAAAAGAACTGAAACAACCGCACGCGCTCAAACACGTCCCGCTCACAAGGGACTGACCACGGTCTTCTGCGGACGAGGACGACAGAATCAGGAGGAGAGTCAGACAAAAAGCCTGCACTGAGAGGCCGGCGGTCACAGTGACCGTTCGGCGGGGATTACAGCTGATTGGCCGTTTGAGCCGCCTGTCAGGGATAAGCCCCGCCCCCTGGGTGGAGCTGCTCTGGTTATGAGGATCTTCCACATGTTTGTGTGCGAGTGTGAACGCAGTCTGAGGtttcagcagtgtgtgtgtgtcatgtcagatatgaaataaaatgatgatggtgtgtgtgtgtgtgaatttgaattgaaattaaTGGAAAAGTCTACTGAATTGCATTTGAGAGGAGTTTAACAGTAATACAGGAGAAGTTTGATTAGTAGAACAGACCGCTTCTGTATGTGTGTCACAACCAATAAACTTCATCATAATTTGGAATAATTTTGTCAATTTATTCTCAGATTAGACCCAATTCTTTTAGTTCAACACTGTCTAGACAATCAACAACCGTCAAACAGATTctaataaagatatatttttatagaatggatcgtttaatataatatacaatatattttgtatgtataagtaaaactatatatgtgtgtgtgtgtgtgtgtgccagctTTCTAAATGTTAAGAGACGTGTTTGCTTcaaatggtttattttcatttaatataatgaaatataaatgaaattgtCATTTCTACAGggaacatttcaaaaacatttaatatcatGCAATGTTTTAGCattggtgttatttttttaattctagacttttttccatttttatttattttttaagcaattttgtctgccatttttattcatttttaaatgtctatagtcttttattgtttattttttattattattagttattttagtactttgaCTTAAACTGAGCCAAAatggcaaatataaaaaatataattaaagttacctgaaataaaatgaaaatttttctctttttttaattaccattatggtttagtttaacttttttttttaatttataggtaaaatgaattgtattattaatttatagcTATTATCAACAGCAATAACCCTGGTTTCTGGAAGCCCTCCACGTTGTGTGTTTTCGGACTCACGTCAGATTGAGGTATTTCCGTGTCATGTTTGCGCAGCGGTTCAAAGGTCACGCAGCTCTGAGCTGGTCTCTGATCTCCAGGAGTGTTAGCGAGCGTGTCGGAGGACGAGAGAATGCCATCTCTTCTGCGTCGCTGTGTGCTGAGCGCGCTCCTGATGAGTCTGCTGCTGTTCCTCAGCTCTCTGTGGCTGCCTCAAGGAAGTGTTCAGACCTGTGAGCAGTCGTGGAGGCCCTGTCTAAGCG
>TU275260
ATGAGACTTGAGCTGAACCGAGCTGAACACTTTCTCACAGCGACCGGATCAAACATACAGCAACTAATAACTCTATAGTAGCCTTTAGTTGAGAAGACCCGCTTCTGTCCATCTTTTAAGTCTAGAAATCTATAACTTGAGTTGATCAGGACGGCGCATGCTTGGTCAGCGATGGAGGAAAGCAAGACTGATCACGTAACCCCGCCCACAACCCCAAACAAAGCCACGCCCTCTCCGCCAAGGTCCGATGAACGGCCGATGGGTTTGAGCAGCCCGGAGTTACTAAAAGAACTGAAACAACCGCACGCGCTCAAACACGTCCCGCTCACAAGGGACTGACCACGGTCTTCTGCGGACGAGGACGACAGAATCAGGAGGAGAGTCAGACAAAAAGCCTGCACTGAGAGGCCGGCGGTCACAGTGACCGTTCGGCGGGGATTACAGCTGATTGGCCGTTTGAGCCGCCTGTCAGGGATAAGCCCCGCCCCCTGGGTGGAGCTGCTCTGGTTATGAGGATCTTCCACATGTTTGTGTGCGAGTGTGAACGCAGTCTGAGGtttcagcagtgtgtgtgtgtcatgtcagatatgaaataaaatgatgatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgttctTGCCTGTGCTCTCTTGCCGTAGTACGGATAGTACATGAGATTGAAGGTTCCGTTTGGAGGGAAGTATTCGACTGAGGCGTAGGTTTCATTCGCCTGAGACATCTTCTGAGCCTTGTGATGAAAAATCAATGAGATATTTATAACAGCGTAGCAGATACTGATGTAAAATGATCTGAATGTCAGTCATCGCTCCGGTAATATGAGACTGAAATTATCTAAACATATAATGCAGTGCTGACTgagagctgaagaaataaaggctcctcagaagatgtgagatgttttggaggagcagtgaaagtaaagctcctcaaaagatcctgaTGATCAGATTCTTCCAGAAAACGATTGATGGAGAATCGAGTAAAGTCGATCTGGAGATATGACCGCAGTTATTCTGACCATTACTTGATCAGAATCAGTTCAGATCCGACACCAGAAGCAGAAGCTG
>XR_006248763.1
AATGATTAATTTCGCTGCAGAAATGAGACTTGAGCTGAACCGAGCTGAACACTTTCTCACAGCGACCGGATCAAACATACAGCAACTAATAACTCTATAGTAGCCTTTAGTTGAGAAGACCCGCTTCTGTCCATCTTTTAAGTCTAGAAATCTATAACTTGAGTTGATCAGGACGGCGCATGCTTGGTCAGCGATGGAGGAAAGCAAGACTGATCACGTAACCCCGCCCACAACCCCAAACAAAGCCACGCCCTCTCCGCCAAGGTCCGATGAACGGCCGATGGGTTTGAGCAGCCCGGAGTTACTAAAAGAACTGAAACAACCGCACGCGCTCAAACACGTCCCGCTCACAAGGGACTGACCACGGTCTTCTGCGGACGAGGACGACAGAATCAGGAGGAGAGTCAGACAAAAAGCCTGCACTGAGAGGCCGGCGGTCACAGTGACCGTTCGGCGGGGATTACAGCTGATTGGCCGTTTGAGCCGCCTGTCAGGGATAAGCCCCGCCCCCTGGGTGGAGCTGCTCTGGTTATGAGGATCTTCCACATGTTTGTGTGCGAGTGTGAACGCAGTCTGAGGtttcagcagtgtgtgtgtgtcatgtcagatatgaaataaaatgatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatttgaattgaaattaaTGGAAAAGTCTACTGAATTGCATTTGAGAGGAGTTTAACAGTAATACAGGAGAAGTTTGATTAGTAGAACAGACCGCTTCTGTATGTGTGTCACAACCAATAAACTTCATCATAATTTGGAA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU275258 True 1706 lncRNA 0.40 5 582074 584568
TU275259 False 1681 lncRNA 0.40 6 582074 584568
TU275260 False 1148 lncRNA 0.48 5 582074 593003
XR_006248763.1 False 808 lncRNA 0.48 4 582052 583560

Neighbor

gene id symbol gene type direction distance location
LOC122334567 NA coding upstream 40039 534160 ~ 542013 (+)
tfr2 tfr2,LOC107730361,LOC107673155,LOC107676171,LOC107660828,LOC107709213 coding upstream 117851 451287 ~ 464201 (+)
LOC122334569 NA coding upstream 147127 431117 ~ 434925 (+)
sh3gl2b sh3gl2,LOC108276379 coding upstream 175824 388194 ~ 406228 (+)
si:ch73-168d20.1 LOC107730363,LOC107564766,LOC107673183 coding upstream 194645 371427 ~ 387407 (+)
LOC122334568 NA non-coding upstream 36184 542329 ~ 545868 (+)
G185405 NA non-coding upstream 37439 541629 ~ 544613 (+)
G185457 NA non-coding upstream 51031 472271 ~ 531021 (+)
G185446 NA non-coding upstream 172987 407460 ~ 409065 (+)
G185443 NA non-coding upstream 197042 384537 ~ 385010 (+)
ctc1 ctc1,LOC107580117 other upstream 154101 413745 ~ 427951 (+)

Expression


Co-expression Network