ednrab (ednrab,LOC107565324,LOC107730027,LOC107570196,LOC108435575)


Basic Information

Item Value
gene id ednrab
gene name ednrab,LOC107565324,LOC107730027,LOC107570196,LOC108435575
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 83329 ~ 92113 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232528.1
ttaaAGATACTTGTCCTGTagttctctctcactctctctcagatctctcatCTCACCGGATCTTTCTGGATTTAGTCACTGAAGATTCAGCTCAGTCCATGAAGAGAGAAGGACGCAGACAGAAGAGTGTGTGAGCGTCTCCCTGaagAGACTCTTTCCGGCCAAATCCAGACAATAGCACTCTTTGATCCGCGATGCGTCCCTCCGGAGTCCTGCTGGTGGCCGTCGTATCCTGGGTGCTGATTGGAGGAGgaagctgtcaatcaaactcatCCGCTGCCCCCCCCGGCTCAGGTCAGCGGTCAAGCggcgtgacctctgaccccagaGGGGCGGGGTCGGTCCGCGTCCGGCCGCTGTCGCTGCCCCCGGCGTGTCTGAGGAGGACGTACATCGAGGGCTTGTTCAAATACGTCAACACCGTCCTGTCCTGCCTGATCTTCGTGGTGGGGATGCTGGGAAACGCCACGCTGCTGAGGATCATCTACCTCAACAAGACCATGAGGAACGGCCCGAACGCTCTGATCGCCAGCCTGGCGCTGGGAGACCTCATCTACATCGCCATCGACATCCCCATCAACGTCTACAAGctgctGGCGATGCGGTGGCCCTTTGATGACAGCATGTTCGGTCTGTTTCTGTGCAAACTCATGCCATTTCTACAAAAAGCATCAGTCGGAATAACAGTCCTCAATCTGTGTGCACTCAGTGTggacaggtacCGGGCGGTGGTGTCCTGGAGCCGTGTTCAGGGTGTGGGGATCCCCGTGTGGACGGCGGTGGAGATCGTCTGTATCTGGCTGCTGGCTGTAGTTCTGGCCGTTCCGGAGGCCATCGGCTTCAAAATGGTCAGCTTCGACTACAACAACGTCACCATCCGCACCTGCATGCTGAAACCAGAGACGCCCTTCATGACGttctACAGGGACGTGAAGGTCTGGTGGTTGTTTGGTTTCTACTTCTGCGTGCCGCTGGTGTGTACGGCCGTCTTCTACACACTCATGACCTGTGAGATGCTGAGCAACAGAAAGGGCAGCCTCAAGTTTTCTCTGAGCGAACACCTCAAGCAGaggCGTGAGGTGGCGAAGGCTGTGTTTTCTCTGGTGCTCATCTTCGCTCTCTGCTGGTTTCCGCTGCATCTCAGTCGCATCCTCAAGAAGATGGTTTACTTCCAGAACGACGTCGGCCGCTGTGACCTGCTGAATTTCTTGCTGGTGTTTGACTACCTGAGCATAAATCTGGCCACCATCAACTCCTGCATCAATCCCATAATCCTCTACTTCGTCAGCAAGAAGTTCAAGAACTGCTTCCGGTCGTGTCTGTGCTGCTGGTGCTATCCGGCCGGGTCTCTCTTGAGCGTCGTGCCTCTGAACGGGACCAGCTTCCAGTACAAGAGTCCTGATCAGAACGGCCTGTCGGACCGGACCGCGCTGCGCAAGGACAGCTACAactgacctcacacacacacacacacacacacacacacagagacatggaCATgcgtatttatattattatatcaaacTGTGTGCACACTATTAAGACAAAGAAAGTGCTTCTTTTTTGGTGTAGTCATCATATTTTGTAAACTTAGACGTGTTTTCAATGAGCTGTAAGTGATTTCCCAAACTGCCCAGCTAACAGGGAACGTTCTCAGAACGTTCCGGAAAGGTTTTCTCAAAGTTATAAACAAACTCTCTTCCATTAAGGTTCATGGAACGTTCATTTAAAGTTATCTGGTCCTTAATAACGTTCTCAGAACGTTCTGGAAAGGTTTTGTCGAGGTTATAAACAAACGCTCTTCCATGAACGTTTATGGAACGTTTATTTAACGTTCTCAGAATGTTCTGGAAAGGTTTTCTCAAAGTTTATGGAACGTTAATTTGAAGTTATCTGGTCCTTAATAACCTTCTCAGAACGTTCTGGAAAGGTTTTCTCAAAGTTATAAACAAACGCTCTTCCATGAACATTTCTGGAACGTTTATTTAACGTT

Function

symbol description
ednrab Predicted to enable endothelin receptor activity. Acts upstream of or within cardioblast migration to the midline involved in heart rudiment formation; cartilage development; and embryonic viscerocranium morphogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in cranial ganglion; gill; neural crest; and pharyngeal arch. Human ortholog(s) of this gene implicated in hypertension (multiple); lung disease; mandibulofacial dysostosis with alopecia; migraine; and obstructive sleep apnea. Orthologous to human EDNRA (endothelin receptor type A).

NR:

description
PREDICTED: endothelin-1 receptor-like

GO: NA

KEGG:

id description
K04197 EDNRA; endothelin receptor type A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232528.1 True 1993 mRNA 0.51 8 83329 92113

Neighbor

gene id symbol gene type direction distance location
LOC122334533 LOC107730023,LOC108435576,LOC108276020,LOC107701242,LOC108249164,LOC107101953 coding downstream 2651 94764 ~ 102175 (+)
wu:fy63c09 LOC107701241 coding downstream 30061 122174 ~ 134352 (+)
LOC122334561 cyp17a2,LOC107574436,LOC107750198,LOC107673162 coding downstream 94065 186178 ~ 193997 (+)
LOC122334540 LOC108275604,LOC102207396,LOC108413728,LOC107570188,LOC107702147,LOC102785773,LOC107737977 coding downstream 127838 219951 ~ 234238 (+)
toporsb LOC107750189,LOC107673181,LOC107575337,LOC107702170,LOC107737957 coding downstream 145148 237261 ~ 245179 (+)
trnaq-uug_24 NA non-coding upstream 31495 51763 ~ 51834 (+)
LOC122334578 NA non-coding upstream 33541 49034 ~ 49788 (+)
G185324 NA non-coding upstream 34585 48227 ~ 48744 (+)
G185321 NA non-coding upstream 36966 45987 ~ 46363 (+)
G185318 NA non-coding upstream 38260 44279 ~ 45069 (+)
G185333 NA non-coding downstream 42524 134637 ~ 136258 (+)
G185352 NA non-coding downstream 45815 137928 ~ 138636 (+)
G185345 NA non-coding downstream 64831 156944 ~ 158197 (+)
G185363 NA non-coding downstream 73403 165516 ~ 167319 (+)
G185407 LOC107673165,LOC107750190,LOC100330136,LOC107568966,LOC107702148 non-coding downstream 109929 202042 ~ 263099 (+)
ctc1 ctc1,LOC107580117 other downstream 321632 413745 ~ 427951 (+)
plod3 plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175 other downstream 446242 538355 ~ 590185 (+)
G185478 si:ch73-269m23.5,LOC107681649,LOC107567120 other downstream 493406 585519 ~ 586595 (+)

Expression


Co-expression Network