toporsb (LOC107750189,LOC107673181,LOC107575337,LOC107702170,LOC107737957)


Basic Information

Item Value
gene id toporsb
gene name LOC107750189,LOC107673181,LOC107575337,LOC107702170,LOC107737957
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 237261 ~ 245179 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232532.1
CTCCAGGCCGTGACGTCACCGGAAAAGCCGCTCCGTGGGCTCCGTTCCTCCACAGCAGTGCGAAGCTCTTCCGCTTCCATCCGCCGTTTAATGTTCGTTTCGCGTCGCTCCGTGTGTTCTCGCTGACGGGCGTCGCGCGGACGCGACACAGACGTGTTTTGGGACGCGGACGCGCGCGCTCCGGATCGCGCGCGTTGTTTTAGCGATGAGGGGCTGACGATCAGATGATGGCGCCCTCTAAGATGAAGCTGCGTGTGAGGAAGCGAGACGGTGCTGGCAAATCTTCTCAGCGGTTATTGGCCAACGCGTCGCCCGATTCCAAATGCCCCATCTGCCTCGACGGCTTCAACAACGTGGCGTCTCTGGACCGCTGCCTGCACCAGTTCTGTTTCCGCTGCATCCACGAGTGGTCCAAGAACAAAGCCGAGTGTCCGCTCTGCAAGCAGCCCTTCCACTCCATATTCCACTCCGTCAAAGGGGAGAACGACTTTAAGGAGTTTGTGCTGCGTCCGCCGGAGAATGGAGCGGCAGCGAACCCCGATCCGCCTGCACGCGTGCTCCGCCCCCGGGTCCTCCGAGGGAGGGAGAGGCGGGGCCACAGGGCGCCAAACCCCGCCCCTTCCTCCTCCCCTCCGCTGGAGGACGACGTTATGTTTGACGGGCTGACGGATGCGGCGGCGCTCGCGGAGAACCAGGACGTCCAGCAGATGGTGCTGCGATTGACGGCGCGCAGGCATGGGCGTGGCGAGGGGCGGAGCTTGCGGCGTTTGAGAGACCAAGACGTCGTGGCGTTTCGACGCGCGCTTTATAGGACTGGCGTGCGAGTGCGCAACTCGAGGGACGCCGGCAGGCAGAGGGACATTTCAGCAGCGTTCTTGCGACAAAATCCTGGCTGTTTGCGACGGCTTTTGCCGTGGCTGCAGCGTGAGCTCACGGTGCTGTACGGTTCGCATGGGTCGCTGGTGAACATCGTGCAGAACATCATCATCTCGCGCATCATGAACTACAACATGGAGGACTCTGCAATCCGGGATGAGCTCCGCCCCTTCCTGCTGGCACGTACAGACCACTTCCTGCATGAGCTGGTGAGCTTCGCCCGCTCCACCCTTAACATGGAGGCGTACGACCAGCAGGCCGTTTACGACTGTCCCGCTCCCAGCTACGAGGAGGGCAGCAGCTCGGACCTCTCTGTTATCGCCATCTCCGAGGATGATGACGATAATGACAGTGAGGACAATGTCACAGAGAATCCCTCTGCTGTCCAGGAATGCCTTGCATCCGTTGCCACAGCCAGTGGAGCAGAAAGTTTGCCAAGTCAGTCAGCCTGGGATGATGAGACGCCTGGTCCCTCCTATTCAACCCTCCTCCCCTCTTCCAGGCAATCACATGGCGAGGGGGTGGAGCCAAGCTCTAGCTCAGTCCCTCCCCTCAGCTCCTTGGATATGACTGACCCCGCGGCGAGTGACAGAGTGTCAGCCGGACCCGGTGAAAATGACGAAGAGGAAGAGTGTCTGATTGTGGGATACGTGAAGCCGATGGCTGAACGGACTCCAGAACTTGTTCAGCTCTCTTCAGACTCGTCTGAAGAAGAGCAAGAGCCAGCTCCAACTGAGACACTGGCCTCAGTAACGAAATCAGAGGCGTCCCAAGTGCAGCTCCCGTTACAGTCCCACAACAACCCGCTTAGACTTAGTCTCTCCCCAGACCCTGCTCCCTTGTGCAGTCCGCAGCACTTACTCTCGGATGGAGTCGGGTCACACAACATAGAACAAGAATCCGACTACTTGTCCGCCCGTGGGCACCGGTCCAAAGATGATTCACATTCATGGCAGAGTCAAGATGACTCCCGATTCAGAGGTCACAGGAAGCACAGAAGTCATCGTTGCTCTGGCAGCAAAGAGAAGGATAAGAGTTTACAACAGTCTCGGCACCTCAAGACCCCGGATGGCTCGCCAAACCAAACACAGAGCTGGACTCAAAGCCCTGCAGTGTCTGTTTGGAGCGGCAGCCCTGCCTCCAAGTCGCGCAGTAGCGACTGCTCTCCTCCTCGAAATAAGAGCGGAGAGCATTCGCACCATGCGAGAGAGAGATTCTCACACTCTCCTTCCAACTCCCGAAGGAGGAGAACCAAAGATAAGAAAAGTAGGTCGCCCGACTCTGACTCTTTTCTTGGTTCCCGACCGCCCTGTGAGGTAAAGCGCAGTCGCAAACGCCGCAAGCGGTCggtcagcagcagcagcgctgATTCGCACTCTGAAAGGTCTTGCCTGGACAAACCCAGTGGCAAACGCAAGTACAAAACCCGGCACTTGGAGCGAGCAGCCCAGCGGCAGCACAAGGAGGGAACCGCGAGCAAGGAAAAGCGGCACCGAGAGCGGCGACGAAGCAGGGAGCGATCTCCGAGTGTGGAGATCATCTACGAAAGAAGGCCGGCTGACCCGTACTGGGTCCAGCGGAAGAAGAGGAGGCATCGAAAGAGAAGGAGGGAATTGCGTTCTCCTACTGTGATCACGATCGATAGCGACAGCGACCGCACCATCGACTGTCTGGACCGCGTCATGGACGCTATAGACCAAACCGCTGCTGATGGGACTCCTGAGCGTGATTCTTTCCCGAACGCAAGCTGTACCTTGGACTCCTCAAATCCTCTTTCTGAGCCTTCGAGTCCCACGGGCCGAGGCGACCCAACCACTGAACACTCACTAAACCTGGACGACTGCGTTGTGGATGTAGTCGACCACAGTAGTTCAGACTGCTCCCGAAATATAGATGCTAGTAATCACGAAGAGTTTGTACCCAATCCTTTCCCAGTGGATTCGATAATAACGGCCCCGCCTTCGGACGTGAGGCTGCTGGAAAGCATTCTGCAAGATCTTGTGGATTTCCAACCGAGGGCGGAGCCGGAAATGGGACCGAGTTCTTCAGGCCAACAGGAACCAACTTCTAGTCAACAAAAAGACCAGTCAGAAACGGGAAGAGATGCTGAAAACTTGGAGAATGAGAACACCGATGACAACGGACCGCAGGTGTCTACAACCAACACTGATAGCTAGAACtgaaacagactttttttttacagacacaTGCTTGTCTGATGCTTATCTGAATCCCGTTTAGACCTTTTATAAACTCATTTAAAGTTTGAATTCCTGCTGGAAACGGATGCTTAAGAAACGTTTGGAgaacttctcttttttttgccattgtCAACTTCATTATTGTTCATGTTGTATTTATAGTTAAGGGTGATCCTCTTCCTCGAATCTGGTGCTGATTCACTGTGCCACAACTCAACTGTGATCATGCCTGGATGGTAACCCCGATTCCCCTAACCTTAACTCTAGTAGCAGCAATTACATAGGGGTTACCATCTAGGCTAGTGGTTCTCAGCTTGTTTGCTTCAAAATTTAGTTTGACAAGATGCAGGGCCTTTGTCATACCGAACGAAAATAAATGGGAGAGTTTATTTTTGCTGTCCtgcacaaaaaaatgtgcaaaacttGCCCCTATAAGATGCAATGAAGCTTTTTCGTATTTAGTTCTCTGAACTTTATTTGTGGTGATCAATTTAGCTCCTACTTTAGAATGGGCTCTAAACCAGTTCTATAGAAACTACCAGGGACTAAGTGTATGCTGGCCGAACAAACGAATACAAAACATTGGCTGCCCAGCATTTTTAGAAAGCCGTGTAGATATACTTACTCCACACACAGGAAATGGAGATATTGCCATTTACTTGTTTTCTGCCGCCTTGTGTTCTTTCCTCAGCCTCGATGATGCTTAGCCTGCAAGTTGTCCTAGGAGATTTAGTCAGATTTTCATACTCTTATCATCTTGTGAATTTTGTTCACATTCCATCCGTGTTACCACAAAACCCACAACACACAACGGAAATGGCTCCGATCACCGCGTTCTCCTTTCACCGGTGGTTATTTGAAAATACCACAAATTAAGACATCACTGTTGGCCGCTTCAGAGTTCCTAACGCTGGTGCTAATGCAAGCAAGAAAATAGCCGGAGGGTGAAATTTGTTCAGTAGGAGCTACCCTGCGGTCTAGTAACCTATAACAAAGCCTGGAATAGACTACATGATTTTTGCCCTGATTTTCCAAAGATTTACAGTCTGGAGACGTTGACGCTGAAAGTCAGAGCCAGTCTGTGTATTTGATAGAAAATCACATATTTTTAGACGTTTTCATTGGTCCAGCGTCCCCTAGCAACAAGGCACGGGTTTCTGCATGAGTTTGTTGAGATCGGAACGACTTTCGCTAGTGTATGATCCTCATTCCCGTAATGCATGATTGCCAGTTTTGCTTTGTCACTATTTACAAGTGTACGCACGATGCCTAGTGGTTTAAAATCTGCTCAGATTTCAAAAGTCGTGTAGCGTATTCCAGGCTTAAGTTCCCAATACGTATTTTTACTCGAGCCACAAATGCGCACCTTTTTAGGGTTGCTAATTCGTACCAAATGGTGCATATTACATATGTACTACTTAATGTACTAATATGCACCTTAGAGGGTTGGATAAGATGCGATGGTGTACCTTAAAGTGCATAGCAGTAGTTAAGGTGCTAATATGCATCTTTTAAGGTTGCATAAGGTACAAAGTTGTCCTTTTAAGGTTATTGCCCCAGTGACATGTTGTTTGATCTGTATATTTCCTGACAGTGTACATATGGTCAGTTGCGTTTTATTATTTGCTCTCAGCATTGTTTTTTCCGCTCCCGTCCGAGCATACCTGTGATCCTGCTTCGAATCACGACCCGCCGGCTGAGAACCACTGATCATTCATTATTCAGTCCCGCTGAAGCTGGAGAACAGTGTCTTTGTTAAACTCAGGGAACAGGTGACATGCACCTCCATGCCTCAGTTacacagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgggACCGTGGTGGCGCCCTGGAGATATAATTGGCTGATCATGTCTACTGAACACACGTCAAGCCTTCTTTACAACAGCTGTCTCTCATGTCAGCCAAcaatcaataaatgcatttaatagacGTACGGTCTAATGTCTGAAGGGGTTTTCTTCGGGAACATCACCGTTGCGAGCCGAGACCCTTCTAAACGGTCGGGGATCTAATGAGTCCTGCGTCCGGGTGACGTCGAGTTAAGTTTCCAATTTTTCACTGAAAGTTGTGAATTTTAATTGCGCAAAATTTGAATATTGCATAAAGCATTGGCCAATCAGCACAAATTCCATCCAACCAATCAAAGAGCACAAGGACTTCTTATAAGCACACGAAGGACTTTATTTTGGCCAATTATTCCCATTAAACCAACgtaatttagcaatttttattCTAGATTTGTTACTTCTACTACGAATGTCTAATGCGatgctacaaaagctttttgaTTTCCAGAATGAGTTATTTCTAGCTTTAATCGGTGTGAACACAGGCCGATATTTATctgttattttttgttctttcgcCAAAGCAATGCGTtttcttgaatttttttcttaaatataaaatatacaattctACCAGAACACTCTCTCGCAAACACGCCGCCCTTAACAAACATTGCATTCACCCTTAACACGTTTTTCTTTCTCGCACAAATGCGTCGCGCTCCTCTGCAATATTTGTGAagttactgtactgtactgtaagtTACTGTATTCTCCCACGGCTGCACTCCAAGACACTTTGCGTTCGTCacatctctttgttttgtttgtaaataacGTGGATTCCATCACAAAGGTTTTGCGGAGCGCGAAATCATTGGGTTCAGGTTTTCAATAAAAAACGGTACACATCTTTTCCACTAAATTTACGTTTGCTCTCAGTGTTTTCAGTAATCGTGATGGTGTTCTGTTCAACAACGCAAAGTGCTAAAGATGCATTAACTTCTACAACTATCCCAACACTAAACACAGTAACGCAAATACAGTAACTATGTCTTGTTGGGAGCTAGAAGGGATACAGCAATGGCCGTAAACCaacaataaatcactttttttcta

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Topors-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232532.1 True 6014 mRNA 0.49 4 237261 245179

Neighbor

gene id symbol gene type direction distance location
LOC122334540 LOC108275604,LOC102207396,LOC108413728,LOC107570188,LOC107702147,LOC102785773,LOC107737977 coding upstream 3023 219951 ~ 234238 (+)
LOC122334561 cyp17a2,LOC107574436,LOC107750198,LOC107673162 coding upstream 43264 186178 ~ 193997 (+)
wu:fy63c09 LOC107701241 coding upstream 102909 122174 ~ 134352 (+)
LOC122334533 LOC107730023,LOC108435576,LOC108276020,LOC107701242,LOC108249164,LOC107101953 coding upstream 135086 94764 ~ 102175 (+)
ednrab ednrab,LOC107565324,LOC107730027,LOC107570196,LOC108435575 coding upstream 145148 83329 ~ 92113 (+)
ddx58 ddx58 coding downstream 114 245293 ~ 257813 (+)
LOC122334538 LOC107750194,LOC101884488,LOC107564762,LOC107708036 coding downstream 21102 266281 ~ 274870 (+)
aimp1b NA coding downstream 33215 278394 ~ 285104 (+)
sgms2b LOC107673184,LOC107750186,LOC107702172,LOC107568965,LOC107568955,LOC107737971,LOC107564763 coding downstream 42383 287562 ~ 295235 (+)
LOC122334545 ccdc171 coding downstream 96509 341688 ~ 362034 (+)
G185363 NA non-coding upstream 69942 165516 ~ 167319 (+)
G185345 NA non-coding upstream 79064 156944 ~ 158197 (+)
G185352 NA non-coding upstream 98625 137928 ~ 138636 (+)
G185333 NA non-coding upstream 101003 134637 ~ 136258 (+)
trnaq-uug_24 NA non-coding upstream 185427 51763 ~ 51834 (+)
G185432 cfi,LOC107737955,LOC107737970 non-coding downstream 58175 303354 ~ 310514 (+)
G185443 NA non-coding downstream 139358 384537 ~ 385010 (+)
G185446 NA non-coding downstream 162281 407460 ~ 409065 (+)
G185457 NA non-coding downstream 227092 472271 ~ 531021 (+)
G185405 NA non-coding downstream 296450 541629 ~ 544613 (+)
ctc1 ctc1,LOC107580117 other downstream 168566 413745 ~ 427951 (+)
plod3 plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175 other downstream 293176 538355 ~ 590185 (+)
G185478 si:ch73-269m23.5,LOC107681649,LOC107567120 other downstream 340340 585519 ~ 586595 (+)

Expression


Co-expression Network