ddx58 (ddx58)


Basic Information

Item Value
gene id ddx58
gene name ddx58
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 245293 ~ 257813 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232535.1
GCGACTTGCGTTATTTCATAAGCTATGATCGCGGCGACTTTCTTAAAGCGGCAGTCCAGTATTTCTCTAGTTTTAGTTCTCTTTAAACTCTTGCGTGTCACAGTGAACTTCTGCGGTATCCTCCTGTAATAGTTTGTGTATTTACCGGGAAAAGGGACTGCTCGGATTTCAGTTTCAGCGAGTATTGCGTTAATAACTGTGTTCACTCGATACGTCTCGATACGTCCTTCGCTCACTAACAAGGAGGCACGTCGGGACACTACAGCGAGCGCTCGGAAGACTCCTACACAGGCAGCAAGCCAGGCTTTAAGACGCCTTCGGTCGGGGAGCGTGTGTTTCGTTTCCTCGCCTGCGCTTTCGGTTTTGTTTCTGGATCAGCTGCTCGAGGCCGGACTGCAGAGATGTACGAGCTGGAGAAGGAGAACCTGCGACGCTTTAGCGATTATATCGCGACGTTTTTACGACCGTCGCTCATCAGGAACTTCATGACGACGTACCTCGATAAAGAGATGGTGGAGAGTATTCTCTCTACAGAGATGACGTCTGTGACCACAGCTGCCCAGATGCTGCTGAACCAGATGTATTGTTTAGAGGAAGTGGGCTGGTTTCAGGCCTTTCTGGACATCCTGCTCGCCTCAGAGTACACCGGACTGCATCAAGCCATTAAAGAGTGGAGCTTCGAGGAGTTAGACAAGCTGAGCGAGCACCGGAGGTTTCTTGAGAAGATCGAGCCCTCGATCACCAAACACATGAAGCCCAGTGAGATGCTGGCCCATATGAACGACTGTCTGAAGCCCAGAGAGTGTGAGGAGATCCAGGCCgaggaGAGTCAGCGCGGTCGTATAGCAGCCAGTGTGAAGCTTGTGACGTCTCTTCTTCGCTCCGACAAACCCAACTGGTTTAAACTGCTGAAGATCGCACTCGGAAACTGTGACTTAGATGAGGCTCTACAACTTCTAGAGACCAATGGAGGAGGTCAGTGTGTGACGGAGGTATGGGACGGAGCACCGGAGGCTATGATGACgactgtgtgttttgagttcagaGAGGAGTCTGAAGACATGCTGATGAGCAGCAACGACACGAGCGCCTCGGAGGAGCCCACCGTCTTCAGAGGGAAATCTGAGCGATCAGGTGAGCGGAAGCTGAGAGAATATCAGAAGGAGCTGACCGCTGCTGCCGCCCAGGGCCAGAACACCATCATCTGTGCTCCCACGGGATGTGGAAAAACCATCGTGGCTTTGGCCATCAGTGAACATCACCTCAAGCAGTTTCCAGACAGAGCAAAGATTGTGTTTTTGGCCACCAAGGTCGACGTCTACGAACAGCAGTACAAGCTTTTCAAGGTTCACTTTTCCAGCAAGGATCCCGACATCAGGGTGACGGGGATGTGCGGTGATATGAATCTGTCTGTGTGCTGGCTGATAGAGAACCACGATATCGTGGTGATGACGGCTCAGATCCTGGTGAACGCGCTGCAGAGCGGCGAGGTGCCTTCCCTCGAGATGCTGTCGCTCATCATATTCGACGAGTGTCACAACACGACCGGAAAACACCCCTACAACAACATCATGAGCCGCTACCTGGACTCCAGACTCTCCGGCGGCACACACTCACTGCCACAGATCGTGGGCCTGACGGCATCGGTCGGCATCGGTTCATTCAAGAGCAGGCTGGAGGCGGAGAACAACATCTTACAGCTCTGTGCCAACCTGGACACCAGGGTCCTCACCACAGTCACCGAACACAAGGACGAGCTCAAGTCATACGTGCACACGCCTGAGAAAGCTTTTTTCGAGGTTCAGCCGTGCACAAGTCACCCCTTCATCAGAATAATCAAAAACATCATGAGTAACATCGAGCAGCTGGCGCTGAAGACCTACAACATCGGTGCGCCTTCctcgctgcacacacacacacacacacacacttacacacactaacacacgtgtttctgtgtgtctctgtcgaACATGTGTCTCAGAAATAGAGCCTCCGTCGAGACATTACAGAACCGAGAGAGGAGAGCGATCTGCAGAGAACTCTACAATTACATCGAACACCTGcggAAATATAACGATGCTCTGATCATTAATGAAGACGCTCGGACTAAAGATGCTCTGGAGTATCTGGACGTGTTCTTCAATCAGGTCCGGAACGCTGGCTTCGACCAGACCGAGAGAAACCTCACCGCGCTCTACGACTGTCAGCGGTCGCAGTTACTGCGTCTGGCCACCGAGGGGGAGCAGAACCCTAAACTAGACGAGCTGAGGTTCATCCTGGAGGAGGAATACCACAGCAACGATCAGACACGCACCGTCATGTTCGTGAAGACTCGAGCCCTCGCCGACGCCATGAAGAAATGGATTGATGAAACCGATTCCCTCAAATTCCTGAAGCCTGGGGTCCTGATAGGAAAAGGACGGAAATCCAACTTTACTGGCACAGGAATGACTCTGAACAATAAGAAAGGGATTCTGGACTCTTTTAAGAGCTCCGATCAGAGTAAGATGCTCATCGCCACATCGGTCGCTGATGAAGGCATCGATATCCCACAGTGCAACTTGGTTCTGATGTATGAGTATGTGGGAAACGTGGTGAAGATGGTGCAAGTTCGAGGTCGTGGTCGGGCGGAGGGCAGCCGGTGTTTCCTGATCTCCAGCAGTAAGGAGCGCATCGAGAAGGAGAGAATAAACATGTTTAAGGAGAAGATGGTGGAGGAGGCCATTATCCAGCTGCAGAGCGACCCCAGCAACCTCAGCAACAAGgtggaCATGCTGCAGAGGGAAGATAAAGCCCGGAGAGATCACATCAGCGCCAGTCCAGAAAAACCCAAAACCCAGGGCAGCTACGAGCTCCTCTGCAGCAAGTGCAAGAAGTTTGCTTGCCTGAGCGACGACATCAGAGTCGTGCTGGGTGCTCATCACATCGTTCTGGATCGTTCCATGTTCAAGCGCTGTATAACTGTTCCTCATAAGAACCCCAAATCCTTCTGTGGCTTCAGTAAGAAAGAGAAGATGCTTTGTGCCGAGTGCAAACACGACTGGGGCCTCATCGCCTCGTACACCACCATCCAGGATCTGCCGCTGCTGAAGATCGAGAGTTTCGTGGTGCAGGATTGCGTCACTCGCAGGCAGGATTACTTCAGGAGGTGGCGTGACGTGACGTTTGCCATCCGTGAGTTTGACATGACTGAGATCACGGCTGAAATGTGCCGGCCGAGAGACTGAGAGCGTACAGTCATACGAGTACAGTTATGAATCTTAAATCGTTCTCACCTGGCTCTAAAGTTCTAAACGCAGGTACTTTTTGGTTTTGTGTAACCGCTGGGCAAACACAACACACGCAGACACTGATTAATCACTATTAGCCttgttattttttgattttttaacTGCAAGTGACGTATCCAATATAACACTTTTAgggatttttatgttttgtattttaacatcGTCGGAGGCACAGGGATATTTGTATCAGtagccaaaaatatattgtgtgggtcaaaatgatcagtttattaagatcatgttctatgaaaatatttttaaatataattaaaacttaGCAATATGCACGGCTCCATTTGAATAACTTTAAAGGAGATCttctcagtttttttatgtttttgctcgctcagattccagattttcaaaaatgtgccccttattaattattaataatgaaatcatttgaTATGAATGTCTCTGATACGTTTGATATCAACTGCTTATCATTGCTTGGTggagaagtgaaataaaatcaaaataaaacttttgaatatttta

Function

symbol description
ddx58 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of with a positive effect on interferon-gamma-mediated signaling pathway. Acts upstream of or within I-kappaB kinase/NF-kappaB signaling; defense response to other organism; and regulation of transcription, DNA-templated. Located in cytosol and nucleus. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human DDX58 (DExD/H-box helicase 58).

NR:

description
probable ATP-dependent RNA helicase DDX58

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K12646 DDX58, RIG-I; ATP-dependent RNA helicase DDX58

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232535.1 True 3791 mRNA 0.49 18 245293 257813

Neighbor

gene id symbol gene type direction distance location
toporsb LOC107750189,LOC107673181,LOC107575337,LOC107702170,LOC107737957 coding upstream 114 237261 ~ 245179 (+)
LOC122334540 LOC108275604,LOC102207396,LOC108413728,LOC107570188,LOC107702147,LOC102785773,LOC107737977 coding upstream 11055 219951 ~ 234238 (+)
LOC122334561 cyp17a2,LOC107574436,LOC107750198,LOC107673162 coding upstream 51296 186178 ~ 193997 (+)
wu:fy63c09 LOC107701241 coding upstream 110941 122174 ~ 134352 (+)
LOC122334533 LOC107730023,LOC108435576,LOC108276020,LOC107701242,LOC108249164,LOC107101953 coding upstream 143118 94764 ~ 102175 (+)
LOC122334538 LOC107750194,LOC101884488,LOC107564762,LOC107708036 coding downstream 8468 266281 ~ 274870 (+)
aimp1b NA coding downstream 20581 278394 ~ 285104 (+)
sgms2b LOC107673184,LOC107750186,LOC107702172,LOC107568965,LOC107568955,LOC107737971,LOC107564763 coding downstream 29749 287562 ~ 295235 (+)
LOC122334545 ccdc171 coding downstream 83875 341688 ~ 362034 (+)
LOC122334546 NA coding downstream 104089 361902 ~ 371295 (+)
G185363 NA non-coding upstream 77974 165516 ~ 167319 (+)
G185345 NA non-coding upstream 87096 156944 ~ 158197 (+)
G185352 NA non-coding upstream 106657 137928 ~ 138636 (+)
G185333 NA non-coding upstream 109035 134637 ~ 136258 (+)
trnaq-uug_24 NA non-coding upstream 193459 51763 ~ 51834 (+)
G185432 cfi,LOC107737955,LOC107737970 non-coding downstream 45541 303354 ~ 310514 (+)
G185443 NA non-coding downstream 126724 384537 ~ 385010 (+)
G185446 NA non-coding downstream 149647 407460 ~ 409065 (+)
G185457 NA non-coding downstream 214458 472271 ~ 531021 (+)
G185405 NA non-coding downstream 283816 541629 ~ 544613 (+)
ctc1 ctc1,LOC107580117 other downstream 155932 413745 ~ 427951 (+)
plod3 plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175 other downstream 280542 538355 ~ 590185 (+)
G185478 si:ch73-269m23.5,LOC107681649,LOC107567120 other downstream 327706 585519 ~ 586595 (+)

Expression


Co-expression Network