LOC122334561 (cyp17a2,LOC107574436,LOC107750198,LOC107673162)


Basic Information

Item Value
gene id LOC122334561
gene name cyp17a2,LOC107574436,LOC107750198,LOC107673162
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 186178 ~ 193997 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232562.1
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgctgATGAGTGTCTCTCTCAGATCCGAGGTCAAACGCTGCTGTAAACATTGAGTTGTTTTCTCTGAGCTCTTACCTTGGAGCTGAAGGTCAAACCCCACAGACACTTCGATGCAGAGCACTTTCTATCCTTTGTTTGGATCAATTACCAAATCTTGTTTTTTCCAAAACATTCCTTCAATATTCTTCAGACCTTTCTTTCACTCTGGTTTAcagtgttttactgtatttactcattcagaaaaaacaatgttatttaatacagtgctctttttactaatttaatacaaaaccatgacaaagttttttttgttatataattaaaagcaatatCACTATCTGTATCATGTCTTCGCTTCACATCTTCtcatttaatcacaattaactgTGCAGTTTTGCTTTAacctttcaataaaaaaaacaataatttggtCTTCTGCacaaaatgacaattcataCTGAATTTAATACAGATTTAATTAAACCATTCGTCataatcaaaattaaagattttatttaaaccgAACTAAATGAAGCCGATGCGTTGTGTCTTCTTTAttctgtttcagttctgttAAAAGCAATGCATCTGGACTAGTTCATGAACACGGTTTTAATTTTGACggctgtttttaaaaagcgGCTTCCTCGAGACCAGGATCTTGATTCTTGATTCTTCGTTCATATTCACCGGCGCACTAGAGGCGGGGCTTCGCTCTCAGCCGTCAGCGCCGCTCTGTCATTGGTGCTTCCCGTGACCTCCAAGGCCGACCCAAGGCTGCTCGGGGCCCCTATAAGAGCCCGAGAGCTGCGTGCGCGGGCACCGGAGGCCGTCATGtgctgggtgtgtgtgtgctgctgctcggcggcgctgctgctgctgctgctcagGTGCATGCTGGGACGGCGCTCGTCGGTGCCGTGTCTGCCGCGGCTGCCGGTGCTGGGCAGTCTGCTGCACCTGCGCTCGTCTCTGCCTCCTCACCTGCTCCTCACGCGGCTCTCCCGCAGCTACGGCCCTCTGTTCGGCCTGTTCTCCGGGCCCCACTTCACCCTGGTGGTCAGCGAGGTCGGGCTGGTCAGGGAAGCGCTGCTGCAGCGCGGCCGGGAGTTCGCCGGGCGGCCCAAGATGgtgaCCACGGACCTGCTGACTCAGGGAGGGAAGGACATCGCGTTCTCAGACTACAGTCCTCTCTGGAGGAAGCACCGGCGTCTGGTGCACGACTCCTTCACGCTGTTCGGAGAGGGGTCCAGCAAACTACAGAGCATCGttCAGGAGGCTGCAGAGGATCTGTGCGAGGAGCTCCAGTCCAGCAGGGGTCAGAGTTCAGATCTCAGCCCGGTTCTGATGCGGGCCGTCACTAACGTCATCTGCAGGCTGGTGTTCAGCTCCTCGTACCGGCGCCACGACCCCGAGCTCCTGACCGTCATGGACTACAACGACGGCATCGTCCAGACCATCGCCCGAGGAGGACTCGTCGACATCTTCCCCTGGCTCCGGGTTTTCCCCAACAAGGACCTGAAGAAGCTGAAGCAGTGTGTTTCAGTGAGAGACCAGCTCCTGCGCAGGAAACTGCTGGAGCACAAGATGACCCTGACGCCCGGAGAGCCGCGAGACCTGCTGGACgctcttctgattggtcagatgaaGGGGTCAGGGGAGGACAACGACATCACGGAGGATCATGTGCTGATGACGGCGGCCGAGGCGTTTGGAGGAGTAGAGACCACCTCCACCACACTGCTGTGGACCATAGCCTTCCTGCTGCACCAcccacaggttcaGGAGCGTGTTCACTCGGAGCTGGATGAGTGTGTGGGTCAGTCTCGCGCTCCGTCTTTGAGCGATCGTTCCCGTCTGCCGTTCCTGGACGCTGTTCTCTGTGAGGTGATGCGCATCCGTCCCGTCAGCCCCATCCTCATCCCGCACGTTGCTATGCGGGACACCAGTTTGGGGGGTCACTCTGTTCCTAAAGGAACGCGTGTTCTGGTGAACATGTGGGCGATTCACCACGACCCCAAACACTGGGACGAGCCCGACCTCTTCAGACCCGAGCGCTTCCTGGACTCGTCTGGGAGGAGAGTGACCCCGGGAAGCTTCCTGCCGTTCGGAGCCGGTCCGAgggtgtgtgtgggagagtCTCTGGCCAGAACCGAGCTCTTCCTGTTCGCCAGCCGCCTCCTGCAGCGCTTCAGCTTCACAGTCCCTCCTGGAGCTGCTCCACCAGAACTACAGGGAAGACTGGGAGTAGTCCTCCAGCCCCAGAGCTACAGAGTCACAGTCACACCAcgacactgacacacacacacacacacacacacacacacacacacacacacacacacacacgacactgac

Function

symbol description
cyp17a2 Enables steroid 17-alpha-monooxygenase activity. Acts upstream of or within progesterone metabolic process. Is expressed in brain and endocrine system.

NR:

description
PREDICTED: steroid 17-alpha-hydroxylase/17,20 lyase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K09754 CYP98A, C3'H; 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232562.1 True 2421 mRNA 0.54 9 186178 193997

Neighbor

gene id symbol gene type direction distance location
wu:fy63c09 LOC107701241 coding upstream 51826 122174 ~ 134352 (+)
LOC122334533 LOC107730023,LOC108435576,LOC108276020,LOC107701242,LOC108249164,LOC107101953 coding upstream 84003 94764 ~ 102175 (+)
ednrab ednrab,LOC107565324,LOC107730027,LOC107570196,LOC108435575 coding upstream 94065 83329 ~ 92113 (+)
LOC122334540 LOC108275604,LOC102207396,LOC108413728,LOC107570188,LOC107702147,LOC102785773,LOC107737977 coding downstream 25954 219951 ~ 234238 (+)
toporsb LOC107750189,LOC107673181,LOC107575337,LOC107702170,LOC107737957 coding downstream 43264 237261 ~ 245179 (+)
ddx58 ddx58 coding downstream 51296 245293 ~ 257813 (+)
LOC122334538 LOC107750194,LOC101884488,LOC107564762,LOC107708036 coding downstream 72284 266281 ~ 274870 (+)
aimp1b NA coding downstream 84397 278394 ~ 285104 (+)
G185363 NA non-coding upstream 18859 165516 ~ 167319 (+)
G185345 NA non-coding upstream 27981 156944 ~ 158197 (+)
G185352 NA non-coding upstream 47542 137928 ~ 138636 (+)
G185333 NA non-coding upstream 49920 134637 ~ 136258 (+)
trnaq-uug_24 NA non-coding upstream 134344 51763 ~ 51834 (+)
G185407 LOC107673165,LOC107750190,LOC100330136,LOC107568966,LOC107702148 non-coding downstream 8045 202042 ~ 263099 (+)
G185432 cfi,LOC107737955,LOC107737970 non-coding downstream 109357 303354 ~ 310514 (+)
G185443 NA non-coding downstream 190540 384537 ~ 385010 (+)
G185446 NA non-coding downstream 213463 407460 ~ 409065 (+)
G185457 NA non-coding downstream 278274 472271 ~ 531021 (+)
ctc1 ctc1,LOC107580117 other downstream 219748 413745 ~ 427951 (+)
plod3 plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175 other downstream 344358 538355 ~ 590185 (+)
G185478 si:ch73-269m23.5,LOC107681649,LOC107567120 other downstream 391522 585519 ~ 586595 (+)

Expression


Co-expression Network