LOC122334569


Basic Information

Item Value
gene id LOC122334569
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025048207.1
NCBI id JAEQBD010000552.1
chromosome length 615743
location 431117 ~ 434925 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232572.1
CGCCTCAGTCACGCGACGCGGCCTTTTAAAACGCCTGCGCTCCGGATCGTGACACTTTGTGGAGCACAGCTGATAGAGGCATCAGAAAAACCAGATCAGAGCTTCTCAATCCGGATCTGACCGAAGCAAAGCATGGACATCAGGGGCCGTTTACAGGACAGACTGACCGAGTACGTCAGCGACACGATCGGCTGCATCGAGACTCTAAAAGACTTCTGTGACCAGGAGCAGGAGTGGGCCTCGGGGAGAAAGGCAGAGATCGAGAAGTTGAAAGAAATCGGTAAAAATGACGAcgtggaggaggagaaggagaagaagatgGAAGTCGTCCTCAGAGACACGATAGAGGGTCTGAAGAAAGTGGAGTCGTTCCTGGAAGCGATGGAGAAGCTGACGGTGACCTCGAGAAGCGTCTTCGTGGAGCGGGTCTTCCTTCTGCGAGGAGAGAGACCTGAAACGGTGCAGTCAGTCATCTCGGACGCCAAAATAGATGCTCCTATCCTTCTCCAGTTCAAAAAAAAACCAGAATCCTTCTTCCAGCCTATGTTCGATAATCTGGAAATCCTGATCAATCAGCTGATTAACTACATAACCAGGACAAAACACCTTTGTCACAGAGTGAGACAAAATTCAGTTCTGGCTGTGGACATCTATAACCGTAACAGTCACGAGCCTTTAGTGCAGCTCATTTTGGACGCGGACGAAGACACCATGAGTCAGATGCATGACACTCTGGAGCAGTTGTCTCAAATCAGGATGAACCCTCGCACCCGGCTGGTGTTCCTCTTTCAGGACGACGCTCAGACGTTCGTAGATGTGTACGGCAAATGCGGCAAGAGAATGTGGCAGTTCCTGGCTGACCTGGAGGAGAGGGCCAAGAAGCTGGACTCAATGAAATATGGGGCCAGCGTCTCCAATGTGGTTGGTAGTTCATTGGGGATTACAGGGGGTATCCTGAGTATTCTTGGAATAGTTCTTGCCCCGTTCTCCGCAGGAGCGTCATTGGCCTTCACTGTGATAGGGGCCGGTCTGGGTGTCACCAGTGGAGCCAATGCCGTTGTAACAAGTATCACTGAGAGCCAAGTCAACCGTTACCAAGAGCAGTCTGCACAAAATTATTTAGATAGTTACAAGGAGGATATGATGAAGATTAAAGAGAGTTTGAAAGAAGTGGCCCACTGTGAACACTGTTTATTGCTGTCCAGTGGAATAGATGCTTCGGCCATTGGCCACAATGCTGCAGACATAGCTCAAACTGGTGCGGGTGCATTTGAAGCATATGCAGCGTATAAAGGCGAGAAAGCAGCTGAAACAGCATCCAAATTTGCAATACAGCACAACGATGTACCCGAGGTGGCTGCACACATGGCTAAGACAAAGCTGGCAAACACGAAAACACTGGGCATCGTAAAGGTTTCTAAAGTTGCGTCTGGCGTCGTGAATGCCCTCTTTATTGGCCTCGACATCTATTGTATTGTTAATGAAAGCATAAGTCTTTCTCAAGGGAGCAAGAGCGAGGCCTCTGACCTCATCCGCTCCAGGGCGGCTCTGTTTAAATCCGAGCTGGAGACCTGGGAGAAAATGCATAATTCCTTATGCATAGGCATAGATACGTTTAGCAAGGACAGGGACACTGTGGAGGGCCCATTTCTCCCTTAAATactgaaatgagctcatttttgACGGTGGCCGAGAGAGAAAAGACGCCTGCGAATTAAGAAATCGTTTTCACAATATCATGTTAACGAATTCAAGTCTAAAATAAAGATTCAGCAGTCAAAAAATAAACCGCCATAGCCATTAGCACAAAGTAAATCAGCTTGTTTTTAAGATACGCAAAATGCTTAAACATGCTTATTGCAATTAGCAACTATACATAGAATCTATACTTTATGTTACGTTTAGCTTTTGCTTTTTCAAAGAGATGAAATGTTGAggagaaagagatagagagagagggagagaggttTGTTCCTCCCtgagaaagaagaaagcaaacttattttgtgtgtgattaTAATTTTTGCTTGAGCTGAACTAATCATTAACTCAAAGCtgtgtattttgattttgagcTAATCTCTTGCATATTTTATAAGAGATTGTTTTGCCTAATATGTAGTTAAGTAACTAGAAGTAAGTAACTGCCTTCTGAGTATGAAACAGCAATGCTTGTGTTAGATATTTGGTCGCACCTCCTGGTGAAGGCTACTCATtgtcattttttcctttttttttgcgtaAGAGATCATCATTTGTTTgctgtttgattgtttttaataaagcgAAAGCATGAGTGGTGATGCGATTTTAA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232572.1 True 2314 mRNA 0.45 5 431117 434925

Neighbor

gene id symbol gene type direction distance location
sh3gl2b sh3gl2,LOC108276379 coding upstream 24889 388194 ~ 406228 (+)
si:ch73-168d20.1 LOC107730363,LOC107564766,LOC107673183 coding upstream 43710 371427 ~ 387407 (+)
LOC122334546 NA coding upstream 59822 361902 ~ 371295 (+)
LOC122334545 ccdc171 coding upstream 69083 341688 ~ 362034 (+)
sgms2b LOC107673184,LOC107750186,LOC107702172,LOC107568965,LOC107568955,LOC107737971,LOC107564763 coding upstream 135882 287562 ~ 295235 (+)
tfr2 tfr2,LOC107730361,LOC107673155,LOC107676171,LOC107660828,LOC107709213 coding downstream 16362 451287 ~ 464201 (+)
LOC122334567 NA coding downstream 99235 534160 ~ 542013 (+)
G185446 NA non-coding upstream 22052 407460 ~ 409065 (+)
G185443 NA non-coding upstream 46107 384537 ~ 385010 (+)
G185432 cfi,LOC107737955,LOC107737970 non-coding upstream 120603 303354 ~ 310514 (+)
G185407 LOC107673165,LOC107750190,LOC100330136,LOC107568966,LOC107702148 non-coding upstream 168018 202042 ~ 263099 (+)
G185363 NA non-coding upstream 263798 165516 ~ 167319 (+)
G185457 NA non-coding downstream 37346 472271 ~ 531021 (+)
G185405 NA non-coding downstream 106704 541629 ~ 544613 (+)
LOC122334568 NA non-coding downstream 107404 542329 ~ 545868 (+)
LOC122334532 NA non-coding downstream 147127 582052 ~ 593003 (+)
G185402 NA non-coding downstream 155390 590315 ~ 600124 (+)
ctc1 ctc1,LOC107580117 other upstream 3166 413745 ~ 427951 (+)
plod3 plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175 other downstream 103430 538355 ~ 590185 (+)
G185478 si:ch73-269m23.5,LOC107681649,LOC107567120 other downstream 150594 585519 ~ 586595 (+)

Expression


Co-expression Network