Fish Transcriptome and Expression Database

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ornamental fish

trnaq-uug_24

Basic Information

Item	Value
gene id	trnaq-uug_24
gene name	NA
gene type	non-coding
species	tiger barb (Puntius tetrazona)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NW_025048207.1
NCBI id	JAEQBD010000552.1
chromosome length	615743
location	51763 ~ 51834 (+)
genome version	ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2857
GGTcccatggtgtaatggttagcactctggactttgaatccagcgatccgagttcaaatctcggtgggacct

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
unassigned_transcript_2857	True	72	tRNA	0.51	1	51763	51834

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
ednrab	ednrab,LOC107565324,LOC107730027,LOC107570196,LOC108435575	coding	downstream	31495	83329 ~ 92113 (+)
LOC122334533	LOC107730023,LOC108435576,LOC108276020,LOC107701242,LOC108249164,LOC107101953	coding	downstream	42930	94764 ~ 102175 (+)
wu:fy63c09	LOC107701241	coding	downstream	70340	122174 ~ 134352 (+)
LOC122334561	cyp17a2,LOC107574436,LOC107750198,LOC107673162	coding	downstream	134344	186178 ~ 193997 (+)
LOC122334540	LOC108275604,LOC102207396,LOC108413728,LOC107570188,LOC107702147,LOC102785773,LOC107737977	coding	downstream	168117	219951 ~ 234238 (+)
LOC122334578	NA	non-coding	upstream	1975	49034 ~ 49788 (+)
G185324	NA	non-coding	upstream	3019	48227 ~ 48744 (+)
G185321	NA	non-coding	upstream	5400	45987 ~ 46363 (+)
G185318	NA	non-coding	upstream	6694	44279 ~ 45069 (+)
G185333	NA	non-coding	downstream	82803	134637 ~ 136258 (+)
G185352	NA	non-coding	downstream	86094	137928 ~ 138636 (+)
G185345	NA	non-coding	downstream	105110	156944 ~ 158197 (+)
G185363	NA	non-coding	downstream	113682	165516 ~ 167319 (+)
G185407	LOC107673165,LOC107750190,LOC100330136,LOC107568966,LOC107702148	non-coding	downstream	150208	202042 ~ 263099 (+)
ctc1	ctc1,LOC107580117	other	downstream	361911	413745 ~ 427951 (+)
plod3	plod3,LOC107709211,LOC107673154,LOC108414592,LOC107737962,LOC107676175	other	downstream	486521	538355 ~ 590185 (+)
G185478	si:ch73-269m23.5,LOC107681649,LOC107567120	other	downstream	533685	585519 ~ 586595 (+)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
rainbow trout (Oncorhynchus mykiss)	trnaq-uug-4	NA	coding	NC_048581.1	CM023235.2	45353478 ~ 45353549 (+)
eurasian perch (Perca fluviatilis)	trnaq-uug	NA	coding	NC_053115.1	CM020912.1	12332027 ~ 12332098 (-)
striped catfish (Pangasianodon hypophthalmus)	trnaq-uug_2	NA	coding	NC_047605.1	CM018551.1	23932866 ~ 23932937 (+)
tiger barb (Puntius tetrazona)	trnag-gcc_15	NA	coding	NC_056700.1	CM032069.1	6038306 ~ 6038380 (+)
mexican tetra (Astyanax mexicanus)	trnaq-uug_2	NA	coding	NC_035909.1	CM008312.1	37092999 ~ 37093070 (-)
mexican tetra (Astyanax mexicanus)	trnaq-uug_7	NA	coding	NW_019171211.1	APWO02000809.1	1981 ~ 2052 (-)