CI01000004_01715623_01744133 (SGIP1B, SGIP1)


Basic Information

Item Value
gene id CI01000004_01715623_01744133
gene name SGIP1B, SGIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1715623 ~ 1744133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01715623_01744133.mRNA
GACTGAAAAAGCGTACCCGAAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACAGTGACTCCACTGTCTCGTCCTATATATTTTATTCCCAGAAAAAAGCCAATGGTGCACCTAATGGTTTTTACGACTCACCAGCTACAAAAGTCAAGACGTACTTCTCCTCTAGTGAGTCAGAGGGAGAGGGAGAGGAGGAGCATGGGAAGAAATTTAAGATCAAGATAAAGCCATTGACGGCAAACAGTGGAAACTGCACAGTATCTACTATGGATGAGCTGAAGGCCTCAGTGGGGACGCTGGCCATCTCTCCTTCCCCTCTGTGCCCGATGAAACGAAACCTGTCAAGTGAGGAGATTGCCAGACCAAGACGATCTACTCCAACACCCACGACAACCCCAGGGCCTGGTTCGGACCCACCCAGAGAAAACACGACAGCGTTCTTCGGCCCACCGTTCGAGACCAATTTTGAAGCACACAACTCAGAAGTGTTCCTGGTTGAGCCGGAGCTCTGGTGTCAGGCCGCTTCTCTCTCCACCCGTGTTCTGAGCAGATCTCTGCCCACTGCAGTTCCGCCTCCACTTCCTCCAAAGAACATTCCTGTCACCTCACCTGGACGTAGCTCTAGCTCTGTAGAATCTTCCGGGCCGTCTTCTCCCGCACGTGCTGGCACTCCACTGTCTGCTGGCAGCCCCATCCCGCCTCTACCACCAAGACCATCGTCACGACCAAAACTACCACCTGGAAAACCAAACCTAGCAGATCTGGCCCGTCCCTTCAGCCCCCCAATCCACTCCTGGAGTCCTCCACCCTTTGCTCCTCTGGCCAGAGCTGAGAGCACCTCCTCCATCTCCTCTGTTACGTCTCTGAGTGCAGCCTCCACACCTACACTAGGCCGAGAACTGAACCTCTCTGTGTCAGCATGTTCTAGAGGTCCAAGTCCTCTCACAATGGGACCCCAAGACACTCTACCAGTGGCAGCCGCCTTCACAGAGACCATCAGCGCCTACTTTAAAGGAGCAGATCCCACTAAGTGTTTGGTGAAGATCACCGGTGAGATGGTGCTGTCTTTCCCAGCAGGGATCACCAGACACTTCTCCACCCAGCCTAGTCCACCAGTGCTGACCTTCACCATCAGCCAGTACAGTCGGCTGGAGCAGGTCCTTCCCAACCCACAGCTTCTGTGCTGCGACACCACACCACCTACAGGTGAATTGAAGGAGTTCTGGGTAAATATGCCAAACTTGTTGAGTCACCTGAAGAAAGTGGCTGAGCAGAGGCCACAGGCCACATATTACAACGTGGACATGCTGAAGTACCAGGTGTCCACTCAAGGGATCCAGTCCACGCCGCTGAATCTTGCGGTGAGCTGGCGTGGTGATGCCAGCAGCACAGACCTCAGGATAGACTATAAATACAACACAGAGGCCATGCCCACACCCACACCACTCACCAACATCCACTTCATGGCAGCTGTGGATGGCGGCGTGACCAAACTGCAGGCCATGCTCCCACCTGCCACCTGGAACCCAGAGACGCAGAAAATTGCGTGGAAGATCCCAGAGCTCTCACAGAGGTCTGAAAATGGAGGGGTTGGCGCTCTCCTGGCTCGCTTCCAGTTAGCCGAGGGTCCCAGTAGACCATCGCAGCTGGCAGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCTGGCTGTGATTTTCAACTTGTAGGTTCAGGCTACAGACTATCCTTGGTTAAAAAAAGGTTTTCTGCAGTGACGACCTACTGGATGGGCTGTGAGTGGGACGTTAGGATGCTCTTTTGGCACTACAAAGACTTTCAAAAATTGTTTTTATCGAAATTCCAGAAGTACAGCACTCAAAATCTCACTTATAATGTCTGGTGTAGAATATCATCAGTGCGTTCTGTGG

Function

symbol description
sgip1b Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to be active in clathrin-coated pit and clathrin-coated vesicle. Orthologous to human SGIP1 (SH3GL interacting endocytic adaptor 1).
sgip1 Enables SH3 domain binding activity. Predicted to be involved in several processes, including energy homeostasis; positive regulation of feeding behavior; and positive regulation of receptor-mediated endocytosis. Predicted to act upstream of or within plasma membrane tubulation. Located in clathrin-coated pit and cytoplasm.

GO: NA

KEGG:

id description
K20065 SGIP1; SH3-containing GRB2-like protein 3-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01715623_01744133.mRNA True 1905 mRNA 0.53 17 1715623 1744133
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Neighbor

gene id symbol gene type direction distance location
CI01000004_01670419_01699238 PDE4BB, PDE4B coding upstream 16385 1670419 ~ 1699238 (+)
CI01000004_01623427_01625278 LEPROT coding upstream 90283 1623427 ~ 1625340 (+)
CI01000004_01592461_01602968 NA coding upstream 112655 1592356 ~ 1602968 (+)
CI01000004_01578642_01584658 NA coding upstream 130815 1578566 ~ 1584808 (+)
CI01000004_01501609_01545725 NA coding upstream 169504 1501609 ~ 1546119 (+)
CI01000004_01750322_01754593 TCTEX1D1 coding downstream 6189 1750322 ~ 1755323 (+)
CI01000004_01757017_01757201 NA coding downstream 12884 1756990 ~ 1757864 (+)
CI01000004_01800502_01807872 NA coding downstream 56369 1800502 ~ 1808852 (+)
CI01000004_01823571_01825813 FAM78BA, FAM78BB, FAM78B coding downstream 79438 1823571 ~ 1826766 (+)
CI01000004_01855598_01856473 IMP3.L, IMP3 coding downstream 111218 1855351 ~ 1856524 (+)
G25242 NA non-coding upstream 11065 1704257 ~ 1704558 (+)
G25192 NA non-coding upstream 130003 1585266 ~ 1585620 (+)
G25226 NA non-coding upstream 144745 1570619 ~ 1570878 (+)
CI01000004_01446583_01461259 NA non-coding upstream 225746 1446203 ~ 1465922 (+)
G25222 NA non-coding upstream 270227 1445065 ~ 1445396 (+)
G25248 NA non-coding downstream 16397 1760530 ~ 1762263 (+)
G25253 NA non-coding downstream 25692 1769825 ~ 1770177 (+)
G25254 NA non-coding downstream 26262 1770395 ~ 1770704 (+)
G25337 NA non-coding downstream 201793 1945926 ~ 1950133 (+)
G25187 NA other upstream 99153 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 367449 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1243777 467802 ~ 471846 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 120026 1867166 ~ 1868986 (+)
G25329 NA other downstream 338924 2083057 ~ 2085707 (+)
G25882 NA other downstream 803942 2548075 ~ 2573049 (+)
G25992 NA other downstream 992403 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 1014323 2745885 ~ 2769135 (+)

Expression

CI01000004_01715623_01744133(SGIP1B, SGIP1) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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CI01000004_01715623_01744133(SGIP1B, SGIP1) Expression in each Bioproject

Bar chart with 34 bars.
CI01000004_01715623_01744133(SGIP1B, SGIP1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location