CI01000004_01859136_01861721 (SEC22BB, SEC22B, SEC22BA, SEC22B.L, S22BB)


Basic Information

Item Value
gene id CI01000004_01859136_01861721
gene name SEC22BB, SEC22B, SEC22BA, SEC22B.L, S22BB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1859131 ~ 1863688 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01859136_01861721.mRNA
AGAAATAGATGGATCCATGCTTTCATGCTGTTTTCATCAAATTCTGACCCTACCATCTGAATGCAGCAAAAAAAAAAAAAATCGAGACTCATCAGGCAATGTTTTTGCACTCTTCTGTTGTCCAATTTTGGTGAGCCGTGTGAATTGTAGCCTCAATTTCCTGTTGGTAGCTGACAGGAGCGGCACCCGGTGTGATCTTCTGCTGCTGTAGTCCATCTGCTTCAAGGTTCGACGTGTTGTGTGTTCAGAGATGCTCTTCGGCATTATTTGAGTTACTGTTGCCTTTCTATCAGCTTGAACCAGTCTGGCCATTCTCCTTTGACCTCTGGCATCAACAAGGCATTTTCGCCCACAGAACTGCTGCTTGCTGGATATTTTCTCTTTTTCGGACCATTCTCTGTAAGATGGCTGTGTGAGAAAATACAAGTAGATCAGTAGTTTCTGAAATACTCAGACCAGCTCGTCTAGCATCAACAACCATGCCACATTCAAAGTCACTTAAATCACTTTTCATCCCCATTCTGATGCTCAGTTTGAACTTCAGTAGATCGTCTTGACCTTGTCTACATGCCTAAATGCATTGAGTTGCTGCCATGTGATTGGCTGATTAGATATCTGCATTAACAAGCAGTTGAACAGGTGTGTACTTAATAAAATGGCTGGTGAATATAAGTGAAGTGAGTGAAAGTGACGTGATAGCCAAGTAACCCCTTCATTCATATTTTGAACACAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTGCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTGAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCGACGAGAATATTTTTGGTGCGCCAAAAAAACAAAATAACGACTTATATAGTGATGGCCGATTTTAAAACACTGCTTCATTAAGCTTCGGAGCGTTATGAATCTTTTGTGTCGAATCATGATTCGGATCGTGTGTCAAACCGCCAAACTGCTGAAATCACGTGACTTTGGCGCTCCAAACCGCTGATTTGACACAAAAGATTCATAACGCTCCGAAGCTTCATGAAGCAGTGTTATGAAATCGGCCATCACTATATAAGTCGTTATTTTGTTTTTTGGCGCACCAAAAATATTCTCGTCACTTTATAATATTAATATTGAACCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACATTAATGGATCTTGAGAGAGGAAATGTCATTGCTGGCTATGCAGGCCTCACTGAGCCATCGGATTTCAACAAAAATATCTTAATTTGTGTTCCAAAGATTAATGAAGGTCTTACGGGCTTGGAACGACATGAGGGTGAGTAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAGTTAGAGCACATGCATTAGAGTAGTGAGTATTGAACACACACACACACACACACACACACACACTGCAATCCGTGGACACACACAGAGCAGTGGGCAGCCATTTGCTGCGGCACCCGGGAAGCGATTGGGGGTTAGGTACTGCTCAAGTATGCAAGGTACTGAGGGTGGAAGAGAGCGCTGTTCATTCAGTCCCCCACCTACATTTTCCTGCTAGTATTAAGAATCGTAGCCGCAACCTTTAGGTTTCCAGTTTGACTCTCTAACCATTAGGCCACTACCATAGATATAGATATATTTTTAATATAAATATCTATGTTTATATATCTAAAATTTAAATCTAATTTTCTAGGACTGGTGTGGGAACTTTTGGAACGCGAATTGTGAAAGCCGGAAAGAATTTGAGGTAACACACCCCCTTCCGGCCAACTCATCTGTACTCTGCTGTCAGTTCAAATGTGTCACTTTATGCCAATCAGTCAAATAATCGATCGCTTCACTTTAAAATAGACCGAAGTTAAAAAGTGAAGACAACAGCCAAAATGGTGTTACTAACGATGATTGTTCGTGTCGCCGACAGTCTGCCACTTGCTGCATCTATGCAAGAAGACGAGCAGTCTGGCCGAAACTTACAGAAGTATCAGAGTCAAGCCAAGCAGCTTTGCCGAAAACTCAACGAACAGAGTCCCACACGGTGCACTTTAGAGGCGGGTGTCATGAGCTTTCACTATGTCATTGAGAAAGGAGTGTGTTACTTGGCCTTATGTGAAGCAGGATTCCCCAAGAAACTGGTGTTTGCCTATCTGGAGGATCTGGAGAGAGAATTCAGTGATCAGTACGGGACAAAGGTCCCGTCAGTGTCACGGCCGTACTTTTTTATTGAATTTGACACATACATTCAGAAAACCAAAAAGTCTTACATCGACAGCAGAGCACGAAGAAATCTGGGCAGTGTCAATTCAGAGTTACACGACGTCCAAAGGATCATGGTCGCTAATATAGAGGAAGTGCTCCAGCGTGGAGAAGCCTTATCTGCCTTGGATTCTAAAGCTAGTAACCTGTCCAGCCTGTCTAAGAAGTACCGCAGTGATGCCAAATATCTCAACACGCGCTCCACCTATGCTAAAGTGGCAGCTGGCGCTGTCATTTTCATCACACTCATTGTTTATGTCCGCTTCTGGTGGCTGTGAATATA

Function

symbol description
sec22ba Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in hatching gland; notochord; and polster. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein).
sec22bb Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein).
sec22b Predicted to enable SNAP receptor activity. Involved in negative regulation of autophagosome assembly and positive regulation of protein catabolic process. Located in ER to Golgi transport vesicle membrane and endoplasmic reticulum-Golgi intermediate compartment.

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01859136_01861721.mRNA True 2620 mRNA 0.42 5 1859131 1863688

Neighbor

gene id symbol gene type direction distance location
CI01000004_01853673_01854481 NA coding downstream 3899 1853188 ~ 1855232 (-)
CI01000004_01833090_01839923 SLC35A3B, SLC35A3 coding downstream 19208 1833014 ~ 1839923 (-)
CI01000004_01814534_01821755 CMPK1, CMPK coding downstream 37376 1813782 ~ 1821755 (-)
CI01000004_01773383_01774888 INSL5B coding downstream 84189 1772928 ~ 1774942 (-)
CI01000004_01758554_01762415 NA coding downstream 96716 1758422 ~ 1762415 (-)
CI01000004_01864053_01864374 NA coding upstream 204 1863892 ~ 1864374 (-)
CI01000004_01874467_01874928 TSEN15 coding upstream 10523 1874211 ~ 1875203 (-)
CI01000004_01876658_01882471 NA coding upstream 12970 1876658 ~ 1882471 (-)
CI01000004_01923895_01931254 ANXA13, ANXA13L coding upstream 59464 1923152 ~ 1931254 (-)
CI01000004_01946043_01954044 PCYT1A, PCYT1AA coding upstream 82096 1945784 ~ 1956769 (-)
G25661 NA non-coding downstream 101810 1755538 ~ 1757321 (-)
G25712 NA non-coding downstream 105671 1753239 ~ 1753460 (-)
G25700 NA non-coding downstream 128508 1728532 ~ 1730623 (-)
G25690 NA non-coding downstream 167070 1691294 ~ 1692061 (-)
G25672 NA non-coding downstream 168294 1689359 ~ 1690837 (-)
G25666 NA non-coding upstream 41625 1905313 ~ 1907541 (-)
G25744 NA non-coding upstream 46602 1910290 ~ 1910523 (-)
G25642 NA non-coding upstream 73511 1937199 ~ 1944111 (-)
G25640 NA non-coding upstream 152569 2016257 ~ 2018609 (-)
G25676 NA non-coding upstream 210045 2073733 ~ 2074026 (-)
G26788 NA other upstream 1410745 3267683 ~ 3275721 (-)
G27746 NA other upstream 3314539 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3756695 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4671139 6538904 ~ 6541252 (-)
G29388 NA other upstream 4767605 6631293 ~ 6631907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location