CI01000004_02027672_02032165 (PFN2, PFN2L)


Basic Information

Item Value
gene id CI01000004_02027672_02032165
gene name PFN2, PFN2L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2027425 ~ 2032165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_02027672_02032165.mRNA
ATGAAACAAAATAGGGCGGTGATTATAGGCCGATGTTTGACACAGTTGTATCTGTTGTTCTCTGAATCGTTAGCCCATGTTAGCTCATTGTTTACTGAGATTTCATACAAGCCAACGAGCCGGACAGCACAGGAGACGCCAAAACCCTCAATCCGCACAACCCTCGCCAGACCTTTAGCATTTGTAGCGTTAAATCCACTCCAGTGGGTGCAGTACGTCCTATATATCCTTTCAAATTACAGAAAAATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCCGATGGCAGCTGCCAGGATGCCGCCATTGTTGGCTACTCGGACGCCAAATACGTTTGGGCATCATCAGAGGGTGGTACTTTTAGCGGTATAACGCCTGATGAAATCGATGTCATTATTGGCAAAGACCGAGAGGGCTTCTTCACCAGTGGGCTGACTTTAGGGAAAAAGAAGTGCTCTGTGATCAGAGACAGCCTTCATGTGGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCATAATGGAGAGCCAACATACAATGTTTCCATAGGCAGAGCTGGCAAAGTGTTGGTTATAGTCATGGGAAAGGAAGGTACCCACGGAGGATCGCTCAACAAGAAAGCATTTGGCATGGCTGAGTACCTGAGGAAAGTTGGATACTAAAGCAGCCCCTTCCCATCCATCCACACAGCAGCTCACTTTAATACACCGCACCACACTACCCACCCACCCCTACCCTCATCCTTGCCCCCTTTTGTCAACTTGACAACACTACCAGAAACAGTTAGTAGATGCATTGTTGTCTCTCTCCAAATCTATCAATTTTTTTTTTTATGAAGTTTTCCTTTTGTTTAATGCTCCATGTTCTTTAGTTTTCCAAATTCTGACATCTTTTTTGTGCCACAGTAAA

Function

symbol description
pfn2 Enables ATP hydrolysis activity; actin monomer binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including negative regulation of ruffle assembly; positive regulation of ATPase activity; and regulation of actin filament organization. Located in extracellular exosome.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05759 PFN; profilin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_02027672_02032165.mRNA True 913 mRNA 0.45 4 2027425 2032165

Neighbor

gene id symbol gene type direction distance location
CI01000004_02019772_02021213 NA coding downstream 6212 2019639 ~ 2021213 (-)
CI01000004_01987895_01997457 NA coding downstream 29968 1986588 ~ 1997457 (-)
CI01000004_01946043_01954044 PCYT1A, PCYT1AA coding downstream 70656 1945784 ~ 1956769 (-)
CI01000004_01923895_01931254 ANXA13, ANXA13L coding downstream 96171 1923152 ~ 1931254 (-)
CI01000004_01876658_01882471 NA coding downstream 144954 1876658 ~ 1882471 (-)
CI01000004_02066165_02067630 NA coding upstream 34000 2066165 ~ 2067898 (-)
CI01000004_02074726_02085013 NMUR1B coding upstream 42320 2074485 ~ 2085104 (-)
CI01000004_02137991_02139934 NA coding upstream 105201 2137366 ~ 2140890 (-)
CI01000004_02198207_02227474 PRKAG2A, PRKAG2B, PRKAG2 coding upstream 165419 2197584 ~ 2227474 (-)
CI01000004_02245903_02355814 KMT2CB coding upstream 213738 2245903 ~ 2356190 (-)
G25640 NA non-coding downstream 8816 2016257 ~ 2018609 (-)
G25642 NA non-coding downstream 83314 1937199 ~ 1944111 (-)
G25744 NA non-coding downstream 116902 1910290 ~ 1910523 (-)
G25666 NA non-coding downstream 119884 1905313 ~ 1907541 (-)
G25661 NA non-coding downstream 270104 1755538 ~ 1757321 (-)
G25676 NA non-coding upstream 41568 2073733 ~ 2074026 (-)
G25657 NA non-coding upstream 83289 2115454 ~ 2123244 (-)
G25660 NA non-coding upstream 162242 2194407 ~ 2195234 (-)
G25648 NA non-coding upstream 205864 2238029 ~ 2240154 (-)
CI01000004_01773383_01774888 INSL5B other downstream 252484 1772928 ~ 1774942 (-)
G26788 NA other upstream 1242268 3267683 ~ 3275721 (-)
G27746 NA other upstream 3146062 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3588218 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4502662 6538904 ~ 6541252 (-)
G29388 NA other upstream 4599128 6631293 ~ 6631907 (-)

Expression


Co-expression Network