CI01000004_02033826_02057420 (TSC22D2)


Basic Information

Item Value
gene id CI01000004_02033826_02057420
gene name TSC22D2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2033003 ~ 2057653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_02033826_02057420.mRNA
ATATATAAAAGATTCATCAGTGTTATCAGCACTGTACGATGGCAGCAGGTAGTGGAAATAGTTTCAAAATAAATATACAGAAGAATATATGCATTTCTTAGAACAACTGAACAACCACAGCAACTGAGAGTCTGTAGTCACACAGTCAAGTTGCACTAATGCCTTTAAACAGTGGTTTTGTATGCTGGTTTCACTGTTCTAACTTAAATTAGAATATTTTTTGTGATATTTTTTCAAAATATCGTCATATTTTTGTTATAGCTGCTGGATAAATAAGTGAACACAGTAACAACATAAGGGAATATATTCAGGCAAGAATCAACTAGGCCTATATTTTAACAGCAAATGTGTTTCTCATAAATGCCAAGTCGGGGCAGATTTTCACATTTGTTTTATATAATTAGCAGCCTATATGAATTTAAAATATAATAGTTTATTTCATGAGAGGTTCATATTGTAACTTACCGCATACAGTGGAAAGCGTTTTTATTATTATTATTTCTTTTTTGCCCGGACAACAGCTGAAACTTGCAGTAGCTTTTATGTAGGCAAGAATGACTTTCAAAAAGCTGACTTTCAAGAAAAAGAAGAAATATTTGAGAAATATTTAGGCTACAGCGGTAAAAAAGTGACAACTAGTTCACATCTTTTTTGTAGAGTTAAACGAGCATGCTTTATGTAAAAATTGGTTACTCCAATGAAACGCAAACCCCGCTATTTTCCCGTTTTAATATGCGTATATTTAAAATGAAAGTGTACATGAACTTACGCCGCTGCTCTAGTTTGAGCGTAGGAAGCCATATTCACCATCCGTTTACGCGCCATGCCTGTTGCGCTCATTTCCCAGCATGCATCGCGATTTTATATAGCCATCTTGTCGGGAGGTTGTTTTCATCCGCCGTTCACGCGTCGACAATGCAACAGGAGAGAAGAGGAAGACGATGACGCACGATCATCGCGCAAAACTGTGAAATTTAGGGTCCGGTGCCGCAACAATCTGCTGTTTTGTGAAGTCATCGGCGTCTTTAAGGGGTCTCCGTGTCATAAAAAGCTGTTAAGCATGTCGAAGATGCCGGCCAAGAAGAAGAGTTGCTTTCAGATCACGAGTGTGACTCAGGCTCAAGTCGCGGCCAACAGCGCGACCGACGACACCGAGAGCCTGGACGACCCGGATGAGTCCCGGACAGAGGACGTGTCCTCCGAGATATTTGACATGTCCAGGACTGACTATGAGCCCGAGGTTTGTGACATTAGCTCCTCGGAGGAGACTCTGAATAATGTTTGTGAGTCAGAGGGGCAGTTATCCACTGCCGCCCCTCTGAACGGTGGGTTTGGCCAGCGCAACCTGGGTCATCAGGGCATCCAGGCCTCTAGTACTCAAGCAGCGGGCACGTCTCAAGTCACAAATTCATCAAGCGTGACGACCATAACCAGCTGCAGTTCACGCTTCAGGGTCATTAAGCTTGACCATGGCACCGGAGAGCCCTTCAGGAGGGGCCGGTGGACCTGTATGGAATATTATGAGAAAGACACGGAGGGCTCTATGATGAGCAAGACTGTGGATAGTATAAGGCACACCAGTGTGACGGAGCCCGGAGCGGATAGGGACAGTGGGCTCGGGGCCACTGTTGGCTCTGTAATGGCTCACGTGGCACCTGACACAGGTGGCGACGGGTCATCTTTCACCGGCCCGAGTTCCGGTTCACCTGAGACCTTTAGTAATAAGCCAGTGCCTCCGCCTGCTCAGCAGCCGGTGCTGGGCAACTCTCATGTGGCTGTCCCTCACAGTCTCCATCATGATGGAGGACACCCGGGCGCCCACCTTCAGAAATCTCCCAGCATCCCTCCTCCTCAAGTGCAGCCGCTGCTTTATCAGCCCCAGAATAGTGCACACCACCTGCAAAGCCAACCGGCTCTGATAGCAACCAGTCAGCCTGATTACGGCCAGCTTAACATGCCTATTACAGTCACCCAAGCTCACCCCGGAGCAAGCCTTTCTGTCGGACATGCCGTCAGTCAGGGGTCGTCCACCATTCAAACCCCATCCGCTGGAGGTATGCAGGTTCTGGGTACAGTAGAAATCCCTGGAGGTGTTCCCTTAGGGAGCCAGCCGGTGTCATCTGTCCCAAACCTGGTGCAGCATCCTGCTGTGGGGCTGTTGAGCAGCATCGCCCCTATGGCCTCCATTCAGCAACCACCAGTTGGACAATACCAGGCCTCAGGAGTAATGCAAGGCTTGTCGACAATGGCGCAAAGCACTCAGAACATGCCCGTAGTACCAGTGACAGTCACAGTAGGCGGCGTGCCAGCCTCAAGTGTGCTCGCTTCTCTGCCAGGATCTGCAACAGTACCCAACCTTAATACCTCTGCACACAGCCAACCATCCCAGGTTCCTCGCAGTGGGACGGCAGGGGGCATTGGCTCTCCGGCCACGGGCTTCAGTCAGACGGATGAGAGCCGGAGGATGTCTGATGCATCGGCACAGGTTCACAGTAAAGACATGGTGAAGCCCTTTATCACAGAAGGCCTGCAGTTATCCAACCCGGCTGTCAACAGTCTTTTCGGAATACCCATTGCCATTGATGGGGAGGAGGACAGGAATCCCTCCACAGCTTTCTACCAAGCTTTCCAGTCTGGCAGTAGGCTGAAGGACTCAAAGATGACCTGTGATAGGTACAGTAATGGGAAGGACCCTGATAGTGTCAAACTTGACACTCCATTTAATGGCTATTTGTGGCACTTTGATGTGATCTCTCTTCCAAAGCTGTTTGTGATGGTTAGTTGTCGTTATGAGGGGCAGAGTGACTCGCACGCTGCAGTATTCTCCTGGACTCATGCACCGCTGCTCCATGAGCCGCTTGATTTCCATGCGTGGCAGGATTTAGTGAAAAGCCATCTGATGTATGCCGTGCGGGAGGAGGTGGAGGTGTTGAAGGAGCAGATAAAGGAGCTCTATGAGAGAAACTCTGTGCTGGAGCGAGAGAACGCAGTGCTCAAATCTCTAGCCAACAGCGAGCAACTCTCCCAACTCACCGTCCAATCCAATTCCAACCCATCCAACTCTCCCTCCCAGCTTGGGTCCATCCCGGGCCAGGCCCAGCCCCAACCTCAGCCTTTCCTTCAGCTGGACGCAAATAAGACCATGGACTCCCTGCCACGACAACCGCAGCCCAATGTCACCTCCGCCTGAAGCCTCTGCGAATTACGCATATATCATTAGAACAGCAGAAACCCTGTCTTGTTCACTACTTCGCTGAGCGTGCATGCTGTCGGCCATCAGGACGGGTGATCATGAGGAGAGGTGATTTCTGCTCGGGCGCAACATGCTAGCATGCCACGGTGGACAACGGTCTCGATTGGGGCTCCCGCATGGCCCCTTCCCCCCCGGACGAGGTGGAGAGTTTGTGAAGAGTTATTTTTTTA

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_02033826_02057420.mRNA True 3423 mRNA 0.50 6 2033003 2057653
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000004_02014703_02018248 NA coding upstream 14537 2014600 ~ 2018466 (+)
CI01000004_02004004_02012588 NA coding upstream 19589 2002871 ~ 2013414 (+)
CI01000004_01999847_02001406 NA coding upstream 30224 1999847 ~ 2002779 (+)
CI01000004_01961480_01979407 DVL3A coding upstream 53538 1960055 ~ 1979465 (+)
CI01000004_01937296_01943730 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding upstream 89273 1937296 ~ 1943730 (+)
CI01000004_02068075_02072887 NA coding downstream 10305 2067958 ~ 2074081 (+)
CI01000004_02116310_02120268 VPS4B coding downstream 58284 2115937 ~ 2120360 (+)
CI01000004_02126757_02136937 KDSR coding downstream 68813 2126466 ~ 2137348 (+)
CI01000004_02143355_02186281 BCL2B coding downstream 85023 2142676 ~ 2186771 (+)
CI01000004_02528689_02568243 NA coding downstream 471036 2528689 ~ 2569227 (+)
G25297 NA non-coding upstream 5211 1978730 ~ 2027792 (+)
G25324 NA non-coding upstream 75742 1956642 ~ 1957261 (+)
G25345 NA non-coding upstream 76511 1956142 ~ 1956492 (+)
G25344 NA non-coding upstream 77398 1955385 ~ 1955605 (+)
G25332 NA non-coding downstream 17266 2074919 ~ 2081442 (+)
G25358 NA non-coding downstream 28106 2085759 ~ 2122591 (+)
G25325 NA non-coding downstream 81265 2138918 ~ 2139139 (+)
G25301 NA non-coding downstream 81725 2139378 ~ 2140889 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 159645 1867166 ~ 1868986 (+)
G25187 NA other upstream 416533 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 684829 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1561157 467802 ~ 471846 (+)
G25329 NA other downstream 25404 2083057 ~ 2085707 (+)
G25882 NA other downstream 490422 2548075 ~ 2573049 (+)
G25992 NA other downstream 678883 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 700803 2745885 ~ 2769135 (+)
G26245 NA other downstream 1451364 3509017 ~ 3522393 (+)

Expression

CI01000004_02033826_02057420(TSC22D2) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

CI01000004_02033826_02057420(TSC22D2) Expression in each Bioproject

Bar chart with 44 bars.
CI01000004_02033826_02057420(TSC22D2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Co-expression Network