Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000004_02068075_02072887 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 2067958 ~ 2074081 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005575 | cellular_component | cellular_component |
| id | description |
|---|---|
| K01669 | phrB; deoxyribodipyrimidine photo-lyase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000004_02068075_02072887.mRNA | False | 2971 | mRNA | 0.43 | 10 | 2067958 | 2074061 |
| TU28565 | False | 209 | lncRNA | 0.38 | 1 | 2073278 | 2073486 |
| TU28547 | True | 360 | lncRNA | 0.32 | 1 | 2073722 | 2074081 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_02033826_02057420 | TSC22D2 | coding | upstream | 10305 | 2033003 ~ 2057653 (+) |
| CI01000004_02014703_02018248 | NA | coding | upstream | 49492 | 2014600 ~ 2018466 (+) |
| CI01000004_02004004_02012588 | NA | coding | upstream | 54544 | 2002871 ~ 2013414 (+) |
| CI01000004_01999847_02001406 | NA | coding | upstream | 65179 | 1999847 ~ 2002779 (+) |
| CI01000004_01961480_01979407 | DVL3A | coding | upstream | 88493 | 1960055 ~ 1979465 (+) |
| CI01000004_02116310_02120268 | VPS4B | coding | downstream | 41876 | 2115937 ~ 2120360 (+) |
| CI01000004_02126757_02136937 | KDSR | coding | downstream | 52405 | 2126466 ~ 2137348 (+) |
| CI01000004_02143355_02186281 | BCL2B | coding | downstream | 68615 | 2142676 ~ 2186771 (+) |
| CI01000004_02528689_02568243 | NA | coding | downstream | 454628 | 2528689 ~ 2569227 (+) |
| CI01000004_02671199_02727898 | GPR158B | coding | downstream | 597138 | 2671199 ~ 2728328 (+) |
| G25297 | NA | non-coding | upstream | 40166 | 1978730 ~ 2027792 (+) |
| G25324 | NA | non-coding | upstream | 110697 | 1956642 ~ 1957261 (+) |
| G25345 | NA | non-coding | upstream | 111466 | 1956142 ~ 1956492 (+) |
| G25344 | NA | non-coding | upstream | 112353 | 1955385 ~ 1955605 (+) |
| G25332 | NA | non-coding | downstream | 858 | 2074919 ~ 2081442 (+) |
| G25358 | NA | non-coding | downstream | 11698 | 2085759 ~ 2122591 (+) |
| G25325 | NA | non-coding | downstream | 64857 | 2138918 ~ 2139139 (+) |
| G25301 | NA | non-coding | downstream | 65317 | 2139378 ~ 2140889 (+) |
| G25372 | NA | non-coding | downstream | 118128 | 2192189 ~ 2192405 (+) |
| CI01000004_01867166_01868986 | C7H1ORF21 | other | upstream | 194600 | 1867166 ~ 1868986 (+) |
| G25187 | NA | other | upstream | 451488 | 1604542 ~ 1616470 (+) |
| CI01000004_01332533_01345585 | SCP2 | other | upstream | 719784 | 1331583 ~ 1346008 (+) |
| CI01000004_00467911_00469949 | AGRP2 | other | upstream | 1596112 | 467802 ~ 471846 (+) |
| G25329 | NA | other | downstream | 8996 | 2083057 ~ 2085707 (+) |
| G25882 | NA | other | downstream | 474014 | 2548075 ~ 2573049 (+) |
| G25992 | NA | other | downstream | 662475 | 2736536 ~ 2736768 (+) |
| CI01000004_02745885_02768971 | NA | other | downstream | 684395 | 2745885 ~ 2769135 (+) |
| G26245 | NA | other | downstream | 1434956 | 3509017 ~ 3522393 (+) |
