CI01000004_02834634_02863535 (GREB1L)


Basic Information

Item Value
gene id CI01000004_02834634_02863535
gene name GREB1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2832744 ~ 2863598 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_02834634_02863535.mRNA
AGCTCTTGGCCTAAAGGCAGGGCTCTCTGCAGGCATGTCCACATTAGCATTTAACACCCCTAAATGTCATTAGCAGTCAAACTGGACCCTGAGAGCCCTGAAGGCAAGACAGAACTATGCTCAGGTGCAGGAGTACTGCAGTTCATCTTTGATATACCATGGAGAAGAGGTGATCCTGTCCTTCTACTGCTAAAAAATATAATCAAAGGGCAGCTGAAGTCTGCCCGCTTTGAGGAAGCTCTTCACAATTCTATAGAGGCCTCATTAAGATCAAGCAGTGGTGATCCACAGCCTGTATTCACACAGCTGTATCTTGAGCCTGATCAGTATCCTAGCAACCTGGAAGATATTAAGCCCAAAATGAACCTGACTCTGAGGTCCGACCCATCCAGCCATGTGCTGGTGAATTGCCAGTCCTCCAATTCCATTGATGATATGGATGATGAGGATGATTCAGACACCAGCAGCCCACCATTGCCTTACCTGCAGGGACCACCTCCTGATGGTTGCTGCACTGTTGATGGTAATAACATTAAAAAACCATTTACAGCAAGTTTCTGTCAAGCAGGAAAGGATCTACGCCTGGTTTCCATGGCAACAGAGTCTATTGAGGTTCCCGCAGGGTTTGAGCTGGTTGGTGCCAAATCGCCCAGCATCCCAGAGCACATCCTTGTCTGTGCAGTGGACAAGCGCTTCCTGCCAGATGAGAATGGGAAAAATGCACTTTTAGGGTTTTCAGGGAACTGTGTGGGCTGTGGTGAGAAAGGGTTCCGCTACTTTACAGAGTTTTCCAACCACATTAACTTGAAGTTATCCACTCAGCCGAAGAAGCAGAAGCACTTAAAGTACTACCTGGTGAAGAACTCTCAGGGTGCTCTGTGCAAGGGAGCCCTCATCTGCTGGAAAGATTGTAAGACACGGCCATTCTCAAGCAGTGCTTCTTCATCCAAGCCTAGTTCTTCATCCTCACTAAGCAGCAAGGAAAATGGAGACACAAATGGCCACAGTCCATCTCCCTTCCCCCTCTCAGACTCGCCTCCTGTTCGCATGCAATCTGGCTCATCCTCAGGGATTTTTGGACCCCCAGAGCTGGGCTTCCTCAAACCGTTGAACACACCGACTCACGGGACCAAGACATTACCGATCGTTCCCACTGCACTGCGAGTAAACGGTCTAACTAATGGTCTGAGTATGGAAGGGCGATCCAGTCTACTGAGCCCCCCTCATACAAACCCACTCGCCACACCTAATCATGGCTATAGGGCCACAGAACCTGGAGACAGTCCAGCATCCTCTGCTATGGCATCAGGTCCGCCCAAAAAGCGCCACCGTAGCTGGCACCCCACCTCTCTAGTGCCCGTCCCAGCCACGGCTGTCCCTGTGCCAGCCATCCGACCGCTGACGTGCAGCTCTGGTTCTTTATTGTCCCTGTCCAATCAACAGCCTCCATCAGTGTCAGGGGTCATACAACCCCAACCAATCACAGCGGGAGAAACTGTCATCATTCCTGACAACCTTCTGAACTCCTCCGGGGTCCGGCCAGTCCTTCTCATTGGTCAAGGCACTTTACCATACTTCTTTGGCAATGTGGGTGATCTGGTGGTGAGCCCCCTGCTGGTGAGCTGCTATAAGGGCAGAGAACTCAATGAGAAGACCCTCGCCAGTCTGGGCATGTCAGCAAGCCAGTTACTCACCACAGAGACCATGATACTGCTCACACTGCAATACCTCGCTCGACTGGGTACGGAGCAGATCCCGTTACGGGAAGAGTTTGAGCAGATTGTACTGAAGGCCATGCTGTGTGGCCCGACTGGCCCTCCCATGTCACCGTCCCAGCTGCCCTGGCTAGCTCGAATGGAGGCCAGTGTGTCAGGGGGCAGCGTTCAGGTTCTGGCCACCCACGGCTCCCTAGGGGAGGGCATCTCTGAGTCGCTGCGCTCTCTGAGTGAAACGCCACCACAGCAGCAGCAGTGTCTGCCCAACTATGTGCTCATTATCTGCACCTCCAAAAGTGGAGTAAATGAGTTCTGCGTGCTTGTGTTGGGTAAATATCAGTCTCGGGCCTTGGCAGAGAGTATGCTCACTACGAATGAGTTTCTGAAGGAGATCAGCTACGAGCTCATCACAGGGAAAGTTAGTGTGCTTGCCTCACACTTCCAAAGCACCTCATTAGGTGACAACATGGACAAACAGCTGGTTCGGTACCAGCGAAAACGCAAAGACCGGGTGGTTCAGCCCTTTCAGGGACATCTCACCGAATACATTCACTCCCAAGAGGCTGCAGCCATGGTACCAGAATCAGGGCCAGATGTGCTGAGTGATGGCTTTCAGATACACCCTCCTCAGCTGAGCGTCGCACGCAGCCTTTTGTCGCAGGTGTGTGCTATCGCTGACTCCGGGAGCCAGAGCTTAGATCTGGGCCGCTTCTGCAAGGTAGATTTCCTGATTCTGGTGCCACCCTCCCACGTCCTGGTTCACCAAACAGTCCAGCGAATACGACTATCAGGCGTCCTGATAGATCTGGGTATAGAGGACGCGACATTAGCTCTACAGAAGTCTGACAAGTATGTGGTACGTCTGGATGCGGAGGTCCACACAAAAATGGAGGCCTTCATGAGGAAGGTCAAGCAGAATCCTTATACGCTCTTCGTCCTCATTCACGACAACTCGCACGTTGACCTGACAAGCGCTCTGTCAGGGTCGGTTTGTCACGGGGAGCTGCAGGGATTGGCCGACCGCGTGGTGAACTGTCCAGAGGTTCTGGAAGCAATAAACTTGCTGGTGCTGCAGGTCAGCTGCTTCCCGTTCACCCTGCAGAGCGGTCAGTCACGCATCAGTACCCAGAATGAAGTGCATTGGCCCAACACTGAGAACCTGGGTGAGGCTTCTCCTAAGGATCTGGTCTACTTTGGGCTGAAGGACTACAGCAAGTCCCTGCAGTGGGGAGTGGCAAGTCCAATCCTCCGATGTGACGACGCCTTTGAGCGGATGGTCAAAACCCTGCTGCAGAGGCACCCGCATTTGCACAGTATGGTGATCCGCAGCTACCTGTTGATACAGCAGTACACAGAGGCTCTGATGGCCCTCACAGCAGCCCCCTCACTGCGGGATCACGTGACCCCTCAGACCCTTGCCATGGTGGAGGATCTACTGAGTGTGCCAGGCCGCAGCAGACACGGGTGCGGTCACATGCTACTGGTGCGCGTGCCCTCGCTGCAGCTGGCACGGCTGGCGCAGGAGCGGCTGGAAGAGGCCCGGGACAAGCTGGGGCTACAGTACCGCTTTGCAGTGCTGCTGGGAAGCCCTGCTGCGGAGGTCAGCCTGCCAGTCCACTTCTGTGCGCGTCTGCGGGCTTGGAGGGGCTGTAAAAATGAAGAGTGGGTCCCGCATACATATGAAGATCTGGAAGGACTTCCATGCATTGTCATCCTCACAGGAAAAGATCCTCTAGGAGAGACCTTCCCAAGGTCACTGAAGTACTGTGACTTGCGACTGATTGACTCCAGCTACCTGACACGTACAGCACTGGAACAGGAAGTGGGTTTGGCCTGTTCATATGTGACACGCAGAGTAATACCTGAGATGAAAACTGCAGTGGGTAGAGAAGAGAGACAGAGAGATGAAGAGAGGAGCTCAGGAGAAATGGCAGAACATGATGATCTCCATATGGAGCTGGAAAGACCACCCAGCAATGCCAGTGCTGCTACCAGGACCTCTGGCTCTACCACAGAAAATGGTGTCAGTTCTTCAAGTGTACTCGACAAACCCTCCTCGCAAAGCGACCCGTCCGCTCAGAGACCAAGCCAGTCCACGCAGGCTCCACGTGAATGTAACAGGAAGCAGGTCTTCCCCCGGACGGCGGTGCTGTCCCGGGCGGCGTATGCCCTGCTGGCCCCTGAGTCGTTGGGTCAGCCCAGTTCAGCATCTCTGCTGCCTCACGCTGATGTGGCATGGAGCAGTCCACTCAGGCCGCCTGTTCCTCACGGTCTCGGAGGGGCAGAGCAGTCCCTCTACTATCGCCAGTGGACCACAGCCAGGCAGCACCACGCAGATTACGAAGGGCCGGCTGTGCCCCATCCTAGAAGACTGCTGCTGAGTGGGCCACCACAGGTTGGAAAAACAGGTGCGTATCTGCAGTTTCTACGGATTCTATTCCGTATGCTGATTCGCCTTCTGGAGGTGGATGTGTATGATGAAGAAGAGCTGGAGGAGGATGTGCAAGACAAATCAAAGTTTCCCACTGCTAGTGGGCCGCAGTGGCCTGACGTGGAAGACATCCGCAAACTGCCATTTGACCTCTACCCCCGTGACCACAAATTCAGATATGCAAGTCCAGTGTATGCAGACAGGATGCCAAAGACCCTGAACGGGGTTAAAGTAGAAAGACTAGAGGCAGAAGCTGAGCCACCAAAGAGAAACACAGTGTCTGTTCGACTCAGCCTGTTTGCGGCCCACAATGCATTTCACCACTGTGAACAGTGCCACCATTACAGCGAGCCTACTCCTGCCGCTCAGCTGTCGGACTGCACCTTCCACGCCTTCACATTCTGCTCATCCATGCTGGGAGAGGAAGTCCAGCTGCACTTTATCATTCCTAAAGCCAAAGAGCCTCATTTTGTCTTCAGCCAGCAGGGCAGTCACTTAGAGAGCATGCGGCTCCCACTGCTCTCAGACAAGGAGTCTGGCATGCTGAAAAGTCCGATCTTCACACCCACAACGGGTCGCCAGGAGCACGGGCTTCTCAACATCTACCATGCCATGGAGGGAGCGGAGCACCTGCACATTTTGGTGGTCAAGCAGTATGAAATGCCTCTCTACAGGAAATACTGGCCCAACCACATCCTTCTGGTGCTGCCCGCCATGTTCAACAACTCAGGAGTGGGAGCAGCTCGATTCATGATCAAGGAACTGTCCTACCACAACCTGGAGCTGGAGAGGAACAGGCAAGAGGAGCAGGGAGTCAAAAGACAGGATGTGTGGCCCTTCATAGTTATGATGGATGACTCCTGCGTTCTGTGGAACGCCCATCAACCTGGACCCGAGGGCAACAGCGAGGTGATGAACGTGTCACTGAAGAGCGTCCTACAGCACATGGAGGCCACTCCTAAGATCTCTCTGTATGCCATGTGTGGCCTGCGAAAATGGAGCAGTAGTTTGTCTTCTCAAGCTCCCACAAGCCCTTTCTCTCGCTGTCACCTGCATGACCTCATCATGCTGAACGTTGACCTCACTCAGAACGTCCAGTATGACCTCAACCGGTTCACATGTGAAGAGGTGGACTTTAACCTGAGGGCAAACAGCAGTGGTCTTCTGCTCTGTCGGTTCAATCACTTCAGCATCATGAAGAAACACATCCCCATCGGAGGACATAAAGACTTCCTCATAAAGCCCAAACTTATGAGGATGGAGACCCCGGTGCGTGTGTGTGCATCTCAGTATGTGTGCGCTCCGGACAGTGAACACACGCTTCTGTCTGCGCCGGCTCAGTTCCTGCTGGAGAAGTTTCTGCAGTCCTGTAGCCATCGTCTCTTTCCTCTGGCCCTCTGTAACAGCGCTAACCCCGTGCTGTCCATAGATGGCTACCTCAACCTCGGACCAGAGATTCAGGTGTGTTACATGAGCTCTCGGCCTCACTCTGTGAATGTGGATCATCAATGCGTGGCCTTCAGTGGGCTGCTGCTCTATTTGTGCGATTCCTTTGTCGTTTCAAGCCTCCTGAAGAAATTCAACTTCCTCAAAGGTGCCACGCTGTGTGTGATCTGTCAGGACCGGAGCTCTTTGCGTCAGACTATTGTGCGTTTGGAGCTGGAGGATGAGTGGCAGTTTCGTCTGCGAGATGAGTTTCAGACGGCCAACTGCAGCGAGGACCGTCCCCTCTACTTCCTCACAGGCCGCCATATCTAATCTCAACATCTCCGTTTCCCTTCAACCATTTGGCCAACGCATAGAGAAGATGTTTTCCAGCATCATAACTCTCGAACTCTGATAAAGAGAATAAGCCTTGATATTCTCATGGGGTCTCCAGTCAGCACTACCTCGGATGACATTTGAGGATAGATACTCTGAAGAAATGTCCAAGTGACAGATACTACGCAGGATACAGATGTTGTGCGTTTGCCTTGTGTGTTTTCCCTTTTTTTAATTTTGAAAAAGCTTTCAGGACATTGTTTGTTGGTGATTTTGCGTGTCCTAACACGCAAGGACAATGCGACGGACATCCTTAGATATGTCCTATATATATATATATATAAATCTCAGGGTTTTTTGTCTCAAGACAAAAGGACTTACTACTGCTCTTCTTGCCTGCTTTATGTACTTTTCATCATCAACGCCATTTACCAAAGACTTATAAACTCCTCAAGATGGAAGCTCACATGACAGCACATGATGATTTTAGATGTGTAGTCTTGGTGGAATTTCATTGGGTAATCCCAACCCATGTCATCAAGGTGAAAAAACTAAAAATCTTTTATCTTGCCAAAGATATTACCTGACGTAATCCAAAACACCATTCCTTGCTCCTCAGAGTTGTCAGTCATCCAAGTTCGGATGTTTCAATTAACCCACAAAGTTCACTTACTGATATCAACATTCGCTATATCTAAAGAAAGCTATTTATGATCTTCTCGATTCCGGCCTTCAACAGCCGATGTGTGCCGGTGTTCATGATTGTAAAAGCTAGTTAGTACATGCCTGATGTATTAACCACCTCTTTATGCTTTAACTGAGGTCATTGAGTCAAAAGGTCATTTTGTCTGAAGTTAGCATCTATTAATCATCATATTTCATTGAAACATTCTTATTTTGAAATAGCTGGGAATGTTTTGGAGTTGCACACTGTAAATGTCTTAAGATGATGACACAATCCCAAACTCCACTCCAAAAAGAGACAATTAATATTAGTGAAACAGGAAAGACAATGCCCATTTCATAAGGATAACTAACTAGCTAGCTAGCTAGCTAGCTTATATGGTATGTCTGAGAATATGAATGTTCAGGAATGGATTATCTTTTGATGTTTAGGACTTTTTGGATGTTAAAAGAAAAAGCTTTGTTTACATTTTAAGAAATGCCGATATTATTAATATATATGACAGACTTTTTTGTCACTTTGGATTCTGGCTAGTTTTACTGAAGAGTCACTTTGAGCCGCATGTGTCACGGATCAAATGCATTCTTTTATTTTTCCATGGCACAGAGAATCTACCTAGGACCCATTAGTTTCTGTTTCGGGTGATTTATTTAAAATTAGAAAAATTGATCCCTTTTTCGAGGGATTGTTTTATTTATTGAACAAGCTTCTTGGACTGATAATCATTGAAATATCAAGAATGTTTTGCTAGGTCAAGTCCTTGAATTCGTCACCAAAAGCTTTGCACACTTCCATTGAAACTATGTACAGATGATGTATTAAAAATGATCTAATGTAAACGAAAAAAGCAGAACAAGTATATGGATTACATTACTTGCCAGTATGAACCAACTGGAGTGTTTAGTAAAAACTGCATCAGGTCCCATAATGATGCTGACTGTAATGATGAAGAAAGCCAAATACCCACTGGACAACCTTTAGAATGTGTCTCATTTGTAGATAATTAGATGTGCACATAAATTATGCAATTTGCTTCTCACAATCTTTGCATCTTTCCTGTCAGCTGTGAATATTCTGAACATATGTAGCACCAAACCATTTGAAATCTTCTACCTCATGATCTACTGGCCGGCTTTGGTTTAGTAAACATTTGATTTCAGAATCATGTTCTTATTGCTGTTGAGATAAATGAATGTAATAAA

Function

symbol description
greb1l Involved in kidney development. Acts upstream of or within pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and mesoderm. Used to study renal agenesis. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness and renal agenesis. Orthologous to human GREB1L (GREB1 like retinoic acid receptor coactivator).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_02834634_02863535.mRNA True 7794 mRNA 0.49 35 2832744 2863598
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000004_02812936_02825192 TROVE2 coding downstream 7552 2812853 ~ 2825192 (-)
CI01000004_02777722_02810321 CDC73.S, CDC73 coding downstream 22423 2777722 ~ 2810321 (-)
CI01000004_02664483_02667653 PRTFDC1 coding downstream 165091 2664483 ~ 2667653 (-)
CI01000004_02638015_02638848 NA coding downstream 193799 2629744 ~ 2639335 (-)
CI01000004_02608555_02621378 NA coding downstream 211366 2608163 ~ 2621378 (-)
CI01000004_02953160_02955378 NA coding upstream 89548 2953146 ~ 2955490 (-)
CI01000004_03070803_03073454 LHX8, LHX8A coding upstream 207018 3070616 ~ 3073481 (-)
CI01000004_03106070_03109051 NA coding upstream 242444 3106042 ~ 3109051 (-)
CI01000004_03133701_03141953 ACOT11, ACOT11A coding upstream 270076 3133674 ~ 3141979 (-)
CI01000004_03187077_03196194 MRPL37 coding upstream 323479 3187077 ~ 3196198 (-)
G26636 NA non-coding downstream 96915 2735595 ~ 2735829 (-)
G26635 NA non-coding downstream 101506 2730923 ~ 2731238 (-)
G26609 NA non-coding downstream 160984 2670313 ~ 2671760 (-)
G26568 NA non-coding downstream 347581 2484232 ~ 2485163 (-)
G26656 NA non-coding upstream 28230 2891828 ~ 2892300 (-)
G26658 NA non-coding upstream 42689 2906287 ~ 2908306 (-)
G26673 NA non-coding upstream 74406 2938004 ~ 2938481 (-)
G26689 NA non-coding upstream 101299 2964897 ~ 2965179 (-)
G26690 NA non-coding upstream 101653 2965251 ~ 2965590 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1057803 1772928 ~ 1774942 (-)
G26788 NA other upstream 410835 3267683 ~ 3275721 (-)
G27746 NA other upstream 2314629 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2756785 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3671229 6538904 ~ 6541252 (-)
G29388 NA other upstream 3767695 6631293 ~ 6631907 (-)

Expression

CI01000004_02834634_02863535(GREB1L) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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CI01000004_02834634_02863535(GREB1L) Expression in each Bioproject

Bar chart with 43 bars.
CI01000004_02834634_02863535(GREB1L) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015269 greb1l coding NC_007113.7 CM002886.2 11685742 ~ 11833356 (+)
bowfin (Amia calva) AMCG00019290 NA coding CM030124.1 CM030124.1 12572727 ~ 12598517 (+)