Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

ornamental fish

G188642

Basic Information

Item	Value
gene id	G188642
gene name	NA
gene type	non-coding
species	tiger barb (Puntius tetrazona)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NW_025048363.1
NCBI id	JAEQBD010000708.1
chromosome length	203102
location	158579 ~ 158808 (-)
genome version	ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU279892
tttacagtgcacttaCAGAATACAGCGAACAATTTTTAAGGATAACGCTGCTTATCTCATTTACCGAAcagtcatatttaataataataacaataacgtTAACTTTCCCAGGCTCGCCAGTACACCAAATAAGTGACTTTCCGCTCACAATAATGCATGTGCATGTAAAGACACACATATGGGATGCTGTTTAGTGATATGGCATGTTGTAAGCTTTGATATAGATTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU279892	True	230	lncRNA	0.36	1	158579	158808

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC122335326	LOC107572768,LOC107756192,LOC107567524,LOC107686811,LOC107563091,LOC107557625,LOC107557627	coding	downstream	44013	111147 ~ 114566 (-)
G188633	NA	non-coding	downstream	615	139162 ~ 157964 (-)
G188605	NA	non-coding	downstream	116476	41827 ~ 42103 (-)
G188644	NA	non-coding	upstream	5086	163894 ~ 165447 (-)
G188645	NA	non-coding	upstream	7161	165969 ~ 166664 (-)
G188646	NA	non-coding	upstream	7886	166694 ~ 166944 (-)
G188639	NA	other	downstream	18244	139457 ~ 140335 (-)

Expression

Co-expression Network