CI01000004_02948465_02951235 (PENKA)


Basic Information

Item Value
gene id CI01000004_02948465_02951235
gene name PENKA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2947216 ~ 2951743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_02948465_02951235.mRNA
CCATAAAATGGGGCCTTAATGTTATGATACATCTATCAAAATGCTGCAACAGATGTTTAAAACACTACAGACATAATATAAAGGATGCAAAACAATGACCTCAAACAAAACAATCACAATGATACTTACATTGATCATGGTTTACACTGCATGGCAGGACCACAGATTGAGTGGTTGAATTGAGTTGGATTGAAACACACTAGTCTATTATTTCTCGAACACTTTGTCCTGTCTTAAGAGGTATGCTGTCTACAGGCTGTATTAGTAATTACCATGAAATGCTCAGAAAAAAACAGCATGCTCTCTTCAGCACAATGGGCCCTAAACAAAATCTCGGAAATATACTGTTGCTTTGTCGTCTGAAGGGAATCAACTAGCCTGTTTTTTAAAATGATGTCCAATGTGGGTCAATAGAACATCATGTTACATTAAAAGCAGTAGCAAAGTGGACTGCAGAGCATTCTGAGCATGACAACAACTTGCTGTCAAAAATAAAGAAAAAATACGTTTTGGTGTGCAGGGTTAAGTTTAGACTTAGATTGTGGATATTTGGCTAATTGTTATTAGCCATGTACATAGCCTAAATATTCACAGTAATTACCATCAAATGCACTGTTGATCACCTTAAACTAAATATAACTCGAATATCGGAAAATGTCATAACATTATTTGATCCTCAGGCAAAAGAAGAAGAAAAAAACTTTACCGCCGTCACTCTATGCGTGATGCTTCCTGCTGACGTCAGATGAGAACGGCGTGGCGTCATGAGGGGTACACTGCTTAAAAGTTGTGAGTGACCGTCGTTTCTGAACAGAGCAGGTGTGGGGTTTATCCTCGTGCTGTGAGATAGTACATACTTGGCTAAAGACGCTTCAGCACCAGTCCTGGTGAGTGATCTTTCTCTAAAACAACTCTGTCCAACATATTCAGCACTACGGTGGACACTGCCAAGAAACTACTGTGAACAGGTAAACTTTGTACAGAATTTAAAGTAGAATAATTAATTCGATTAACTAATCATTTAAACTATTGGATGAGTTGGTTGGTCTAGTGATGTGGTTTCTTTAATGTGCAAATGCGCTTAGTATGCTATTTTTTTTGTGCGCGCGCATTATAGCCTGTAGTTAAAGTATATGCGTATTATATAATTTACCACTTTTATGACTATTTTTTAAAAGACTCTACCACAGATTGCTTTATATTTTCCTCATGCTCATGTAAGTAAAGGTAAAATGCTCGTTTGTAGCCCATGGCGTTAACTGTGAACTCCTGGTGGACTCTGGCTTTGAGCGCCTGTCTCGTGCTGATGGTTCGAGCTGAATGCGGCAGAGACTGCGCGCTCTGCGTTTACCGGCTGTTCCATCAACAGACAGAGATCGACACACTGACCTGCACATTAGAGTGTGAAGGAACAGTGGACTCCAGAAAACTAGAAGTCTGTAAAAGCATCCTCACAGAAGAGGATCGCCTTGCCATCGACAACCTTGGCAAGCAAGAAGAAGAGAGCGCAGGCCATCTTCTCGCCAAGAAATATGGTGGCTTCATGAAGCGTTACGGGGGCTTCATGATTAAGAAAGCAGCAGAGATCGGCATGGGAGCCCCAGCTGACAGTGACGGCACAGAAGCAATTAGTAAGAAATATGGAGGCTTTATGAAGAAGGACAAGGCAGAGGACGGAACCGAAGACCAGCAGGTGGAGCTGCTGAGAGAGATCCTCAGAGTCGGTCTCACCTCAGAGTCAGATGAGCAGCATGATGGGGACATGGTCAAACGTTATGGTGGCTTCATGAGGAGCGTACAGGGGAACAGTGGTCTAGGGGAGGCAGGGAGAGACCTGCACAAGCGATATGGGGGGTTTATGCGCAGAGTGGGCAGGCCTGAATGGTTGGACACCCAGAAAAGCAATGGGTTTCTGAAACGCACTTGGGAGGACGGAGGCGAGACGGCACTGCCTGACATGCAGAAGAGATATGGAGGATTCATGGATTAGAATTAAAACATGGACACCCATCCTAAACAACCTGTTCCTACTTTGTGTAGAGCTTGCACTGTACCAATTTCACGTGAAGCCATTTTTAATTACTATTTATTTTTGTCTTTGCTGCTGAATATTCCTCCATAATGTACAATGTACATTTGTGTTCTCTGTGACTAGGGTTTGTGTTTAAAAAAAAAGGAAAGAAAATAATATTTTCCCATTCTCTGTACTTACAATGGAATCACCCATCAGATGGGACATTTGGTAAAGACAAAGGACAATAATCTAACTATTTCTGGGTCTCATCATGACGAATGAAAAGCACTTTTCACTGTGTTGCTTTGTTCTCTGAGAATCTCATCACATTAGCTAGTCTGCTTCGCTCATTGAACATTGTAGTGAGGTTAAGTTTGCTGTCTGCACTTGATGATTAATGCATTTCTTTTAACAACTTTTTAACAGCCTTTGTTCTTGTTTAAATCAAAGCAACATTTTTGAGCTATTAGCTGTACAGAATACA

Function

symbol description
penka Predicted to enable opioid receptor binding activity. Predicted to be involved in chemical synaptic transmission; neuropeptide signaling pathway; and sensory perception. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in central nervous system; neural tube; neurons; and retina. Orthologous to human PENK (proenkephalin).

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG:

id description
K18832 PENK; proenkephalin A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_02948465_02951235.mRNA True 2498 mRNA 0.41 2 2947216 2951743

Neighbor

gene id symbol gene type direction distance location
CI01000004_02906581_02908320 IMPAD1 coding upstream 38896 2906479 ~ 2908320 (+)
CI01000004_02903759_02904287 NA coding upstream 42892 2903759 ~ 2904324 (+)
CI01000004_02865415_02867952 NA coding upstream 78847 2864853 ~ 2868369 (+)
CI01000004_02745885_02768971 NA coding upstream 178081 2745885 ~ 2769135 (+)
CI01000004_02671199_02727898 GPR158B coding upstream 218888 2671199 ~ 2728328 (+)
CI01000004_02955707_02959931 SDR16C5A coding downstream 3787 2955530 ~ 2959931 (+)
CI01000004_03051206_03066124 SLC44A5, SLC44A5A coding downstream 99463 3051206 ~ 3066588 (+)
CI01000004_03110546_03114901 CRYZ coding downstream 158803 3110546 ~ 3115611 (+)
CI01000004_03119968_03122260 NA coding downstream 168225 3119968 ~ 3122260 (+)
CI01000004_03124603_03125975 NA coding downstream 172860 3124603 ~ 3126107 (+)
G26090 NA non-coding upstream 16659 2930142 ~ 2930557 (+)
G26086 NA non-coding upstream 25245 2921717 ~ 2921971 (+)
G26048 NA non-coding upstream 84622 2860431 ~ 2862594 (+)
G26046 NA non-coding upstream 88291 2852798 ~ 2858925 (+)
G26042 NA non-coding upstream 115173 2831649 ~ 2832043 (+)
G26099 NA non-coding downstream 154 2951897 ~ 2952318 (+)
G26059 NA non-coding downstream 43748 2995491 ~ 2997974 (+)
G26063 NA non-coding downstream 117717 3069460 ~ 3069786 (+)
G26128 NA non-coding downstream 118259 3070002 ~ 3070238 (+)
G26147 NA non-coding downstream 145114 3096857 ~ 3097154 (+)
G25992 NA other upstream 210448 2736536 ~ 2736768 (+)
G25882 NA other upstream 374167 2548075 ~ 2573049 (+)
G25329 NA other upstream 861509 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 1073858 1867166 ~ 1868986 (+)
G26245 NA other downstream 557274 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 599305 3550329 ~ 3553423 (+)
G27805 NA other downstream 2421082 5372825 ~ 5373803 (+)
G28165 NA other downstream 2780846 5732589 ~ 5733001 (+)
G28302 NA other downstream 3518285 6470028 ~ 6502087 (+)

Expression

CI01000004_02948465_02951235(PENKA) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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CI01000004_02948465_02951235(PENKA) Expression in each Bioproject

Bar chart with 25 bars.
CI01000004_02948465_02951235(PENKA) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016207 penka coding NC_007113.7 CM002886.2 11508691 ~ 11512819 (-)