CI01000004_03433963_03436906 (GADD45A, GADD45AA)


Basic Information

Item Value
gene id CI01000004_03433963_03436906
gene name GADD45A, GADD45AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3433832 ~ 3436906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03433963_03436906.mRNA
AAAATCCACTCCTGTCGGAGTCTGCGCGCGCTTCTGGAGTCACGTGGCCTACCGACACATTTCACCTTATTGTGCTTCACAGTTTTATGTAGCCTACTTGATAGTCCTGTACAAAAGAAATAACATCAGGATAGTCTTTTCAAATCAGAAAAAAATGCCAAAGAAAGAAGACGTACGAGAACTCTTGTGGATTTTAAAAGGAAAGTTATTCAACTCCGTGCTGGATTTTACGTGCAACATGACTTTTGAGGAACTTAACGGAGATTACTCTATTGAAAGGATGGATTCTGTGATTAAAGCTCTGGAGGAGGTCCTGCGCTCCGCATTACCGCAGGGATGCATTACAGTTGGGGTCTACGAGGCTGCAAAGTCACTCAATGTGGATCCTGATAACGTGGTGTTGTGCATCTTGGCAACTGACGACGATGATACGAAGGATGTGGCGCTTCAGATACACTTCACTCTCATTCAGGCTTTCTGCTGTGAGAACGACATCAACATCCTGCGCGTGAACAACACTCACCGCCTCGCGCACATCCTCGGGGGCGCGGGCATGCACGGGAGCGAGCAGATGGATTTGCACTGCATTCTGGTCACTGTTCCACATGCATCCACATGGAAAAACCCAGCTCTGGGAAAAGTGAACCGCTTCTGCAGAGAGAGTCGGTGTATGGATCAATGGGTGCCCATTATCAACCTTCCAGAACGATGAGGACAGCTAAAACCAAGAGGAGAAAACATGCATAAAAATATCTAGTAAAAAAGATAAAAGCTAAAAAAGGTGGTCACAAAAAGGACTGATTGTCCAGACCGGTGGAACTGGGGACTGACCTTCAGAATAAA

Function

symbol description
gadd45aa Acts upstream of or within paraxial mesoderm development. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; eye; intestine; otic placode; and solid lens vesicle. Orthologous to human GADD45A (growth arrest and DNA damage inducible alpha).
gadd45a Enables kinase binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including cellular response to mechanical stimulus; negative regulation of protein phosphorylation; and positive regulation of stress-activated MAPK cascade. Located in cytoplasm and nuclear speck.

NR:

description
Growth arrest and DNA-damage-inducible, alpha like

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03433963_03436906.mRNA True 843 mRNA 0.46 5 3433832 3436906

Neighbor

gene id symbol gene type direction distance location
CI01000004_03277921_03285364 FAM69AA, FAM69A coding downstream 148468 3277741 ~ 3285364 (-)
CI01000004_03244252_03265862 EVI5 coding downstream 167785 3243903 ~ 3266047 (-)
CI01000004_03238528_03240932 GFI1AA, GFI1 coding downstream 192341 3238358 ~ 3241491 (-)
CI01000004_03214098_03222707 GLMNA, GLMN coding downstream 211125 3214098 ~ 3222707 (-)
CI01000004_03204599_03205569 TCEANC2 coding downstream 227764 3204572 ~ 3206068 (-)
CI01000004_03475454_03478135 NA coding upstream 37988 3474894 ~ 3479485 (-)
CI01000004_03505898_03508656 NSUN4 coding upstream 68892 3505798 ~ 3508770 (-)
CI01000004_03514180_03525227 PIF1 coding upstream 76767 3513673 ~ 3525582 (-)
CI01000004_03556991_03559357 ARTN coding upstream 119576 3556482 ~ 3559357 (-)
CI01000004_03559459_03560064 NA coding upstream 122553 3559459 ~ 3560064 (-)
G26854 NA non-coding downstream 27005 3406403 ~ 3406827 (-)
G26837 NA non-coding downstream 78360 3355215 ~ 3355472 (-)
G26811 NA non-coding downstream 78667 3342814 ~ 3355165 (-)
G26803 NA non-coding downstream 81908 3346000 ~ 3351924 (-)
G26812 NA non-coding downstream 101589 3330745 ~ 3332243 (-)
G26924 NA non-coding upstream 111568 3548474 ~ 3548695 (-)
G26948 NA non-coding upstream 220648 3657554 ~ 3657869 (-)
G26955 NA non-coding upstream 236033 3672939 ~ 3673155 (-)
G26902 NA non-coding upstream 382277 3819183 ~ 3929949 (-)
G26889 NA non-coding upstream 447459 3884365 ~ 3907456 (-)
G26788 NA other downstream 158111 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1658891 1772928 ~ 1774942 (-)
G27746 NA other upstream 1741321 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2183477 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3097921 6538904 ~ 6541252 (-)
G29388 NA other upstream 3194387 6631293 ~ 6631907 (-)
G29656 NA other upstream 4527458 7964364 ~ 7965500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015250 gadd45aa coding NC_007113.7 CM002886.2 10280645 ~ 10284572 (+)