CI01000004_03505898_03508656 (NSUN4)


Basic Information

Item Value
gene id CI01000004_03505898_03508656
gene name NSUN4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3505798 ~ 3508770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03505898_03508656.mRNA
ACAAGTAATAATTTGTATGCGCGAATATGATTTTTTTTTTTTTTAATTTTTTTTATAAACAAGCTAGGAACCAATGAGGACAAAAGCGACGGACTCTTTTGATGATACACAAACATGGCTGCGTACGTATGCACGAGATTTTGTATAAATAAATTCAAAGACTCGATTACATTTATTCAGCGACGGTATCGAGTTAAAACAAAATGGGCAGCAACAAGGCCCAAGTTTCCAGCTACTGAACTTGCTCTGCACAGCTTTGACACAACGTACAGTATGCAGTTAGGGGACCTGTGGCCCTCTATTCGAGTTGCCATGCTGTGTGAACAAAAGTATGGAGCACTGATAAACAGTTTCTCTTCAGAACCTCATGTAATCACAGATTTAGAAGCTCAAGGATGTAGAGACTTCATCAATATTGACTGTTCCAGAAATGAGGTACATCAACTTTCACAGGACTCCACAACCTCACATAGAGATTCAACAGAGCTGGAAACTGCTGCTCTTCAACACAGTATAAGTCCTGATATAAAATGTCTTGTTTTTCCACAAGGAGACATATCTAGATTTAAGCCTGCAAGACCTGACAGCAGTGGTATATTAGGATATTACCTTCTGGATGCTGCTTCGGTGCTGCCTGTACTAGCGCTGGACGTCCAGCCTGGACACACAGTGCTGGATCTATGTGCGGCTCCTGGAGGGAAGACCCTTGCTCTCCTGCAGGCACATTCAGTCGATTATCTATGGGCGAATGACTTATCAGTTTCCCGCACAACACGATTACGCAGGACTCTTCAGAGCTACGTGCCTAAAGAGATCCTGGATGAAAACAAAATCCACATCACATCCACTGATGGTCGGCAGTTAGGCCTGACAGAGGAGCGAAGCTTTGACAGAGTGCTTGTAGATGTTCCCTGCACCACAGACAGACACTCTGCAATGGTGGAGGAGAACAATTTATTTAAGAGGTCCAGGACCAAAGAGAGACAGAAACTTCCCCTCTTGCAAATACAGCTTCTTGTGGCTGGGATCCAGGCCGCGCGCCGGGGTGGACACATAGTGTACTCTACGTGTTCCCTGTCCCAGCTGCAGAATGAGTGTGTGGTGCAACAGGCCATAAGTCTTGCTCAGCAGGAGCTGGGAATCACAGTACAGGTTCAGGACCTCAGATGGTTCACTCAACAGTTTTCCGACACTTTCCACTTTGCTCCACAGTTAAGTGTCGGGGAGCTGGTTTTGCCACACCTGTGTGCCAACTTTGGACCTATTTATATGTGTAAATTACAACGAATAAACTAGCCGGGCATTCCGATTTTAGCTCAAATGACATTTTTGCTGCAATAGTGCCCCCTTGTGACCAGACATGGAATTTCCTTTGACTATGAGGCTCTGAATTAAA

Function

symbol description
nsun4 Predicted to enable methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human NSUN4 (NOP2/Sun RNA methyltransferase 4).

GO:

id name namespace
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03505898_03508656.mRNA True 1396 mRNA 0.45 6 3505798 3508770
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000004_03475454_03478135 NA coding downstream 26313 3474894 ~ 3479485 (-)
CI01000004_03433963_03436906 GADD45A, GADD45AA coding downstream 68892 3433832 ~ 3436906 (-)
CI01000004_03277921_03285364 FAM69AA, FAM69A coding downstream 220434 3277741 ~ 3285364 (-)
CI01000004_03244252_03265862 EVI5 coding downstream 239751 3243903 ~ 3266047 (-)
CI01000004_03238528_03240932 GFI1AA, GFI1 coding downstream 264307 3238358 ~ 3241491 (-)
CI01000004_03514180_03525227 PIF1 coding upstream 4903 3513673 ~ 3525582 (-)
CI01000004_03556991_03559357 ARTN coding upstream 47712 3556482 ~ 3559357 (-)
CI01000004_03559459_03560064 NA coding upstream 50689 3559459 ~ 3560064 (-)
CI01000004_03588875_03589130 NA coding upstream 79206 3587976 ~ 3589253 (-)
CI01000004_03594612_03595116 NA coding upstream 85363 3594133 ~ 3595141 (-)
G26854 NA non-coding downstream 98971 3406403 ~ 3406827 (-)
G26837 NA non-coding downstream 150326 3355215 ~ 3355472 (-)
G26811 NA non-coding downstream 150633 3342814 ~ 3355165 (-)
G26803 NA non-coding downstream 153874 3346000 ~ 3351924 (-)
G26812 NA non-coding downstream 173555 3330745 ~ 3332243 (-)
G26924 NA non-coding upstream 39704 3548474 ~ 3548695 (-)
G26948 NA non-coding upstream 148784 3657554 ~ 3657869 (-)
G26955 NA non-coding upstream 164169 3672939 ~ 3673155 (-)
G26902 NA non-coding upstream 310413 3819183 ~ 3929949 (-)
G26889 NA non-coding upstream 375595 3884365 ~ 3907456 (-)
G26788 NA other downstream 230077 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1730857 1772928 ~ 1774942 (-)
G27746 NA other upstream 1669457 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2111613 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3026057 6538904 ~ 6541252 (-)
G29388 NA other upstream 3122523 6631293 ~ 6631907 (-)
G29656 NA other upstream 4455594 7964364 ~ 7965500 (-)

Expression

CI01000004_03505898_03508656(NSUN4) Expression in PRJCA010000

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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CI01000004_03505898_03508656(NSUN4) Expression in each Bioproject

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CI01000004_03505898_03508656(NSUN4) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015248 nsun4 coding NC_007113.7 CM002886.2 10160484 ~ 10169433 (+)