CI01000004_03514180_03525227 (PIF1)


Basic Information

Item Value
gene id CI01000004_03514180_03525227
gene name PIF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3513673 ~ 3525582 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03514180_03525227.mRNA
ACAATCGACCAATCGTTGTAGAGCGGAACTATTTGAAAATCGTGCGTGAGCATCATAATGAATGAACAGCTGGTGGTGTGGTGACTCGTTGTTTAAACAGTGCATGAGAAAGGTGAGTTAGTATTCTTTATTAAGCAAATTAATAACGAGACATGAACACGCACGTGTTTTTTTTATGAAAGATTTGTCATTTCAGTTGAGATTAATGTTTGTTGCATGTAACTTTATTCTTTAATCTACAAATTTAAATGTAGCTATAATAGCCCAAGCACTCGGTGTTATTAAATGACTAAACAAGCCATAAGATACTCGATCAAATGCTTTAAGCTGCTCTTCTATGTTCTCTTAAAGTAAAATGCTGGGACACATTGATCCCGCTGAGCTTCAGTGCACCGTGGCAGTGGAGCGCTTGAATCCTGCAGGTCAAGCCATCAAACGGCAGCTCATCCGCAAAGCCACCGTCACATTAGGGCGTAATGAGTTTCAGGAGATGGTCCTGCGCGTCCACGATGGCAAAGCTCCTCAGAACTTCATGCTGCGCGATTTCCAGCTCTTTACGCGCTTTGCAAAGGATGGTAAATGTACTGTTAAATTCGTCCCGGAGAGCACACAGGTTCTAGTCTCTGACTGTCCACCGGATCGTTTGAAGGTGTTCCTCAAGACGCTCAGCATCAAACATCAAGCTTCCCAAAGCAACAAGCCTTTGAGTGATAGGGCTAAACTACGAGCCGGCCTCCCTAGAGCTTTCGAGACCGTCAGTCCTCTCCAGCTGAAAGATGTGCAGAAAGCAAACGAGCTGAGGAGTAAAGTGAACGCCCCAATTCAACCCAAAGGTCCTTCAGAGAGATCTGTCAATAAGGTCTTGGGTGAAAGGAAACAAGTGAAAAGACCCAGACCTGATTGTGACACTAGTCCGGTTAAGGCGCTTCACCCCAATAAGAAGCCTGTCTTGGTTCTGCCTTTGGCACAAAAGCTAAGCAAAGAGCAAACTGCAGTTCTCAATGCAGTTTTGAGTGGCAAGAATGTGTTTTTCACAGGCAGTGCAGGTACAGGGAAGTCCTTCTTGCTCAAAAGAATTGTAGGCTCTCTGCCCCCAAAAAGCACATATGCAACAGCGAGCACTGGTGTCGCAGCCTGTCACATAGGAGGAACCACGCTGCACAGTTTTGCAGGTATTGGGTCGGGCTCTGCTCCTCTTGAACAGTGTCTTGAGCTCGCTCAGCGTCCGGGGGTGCTGCAGCACTGGACCTCCTGCAAACACCTCATTATTGATGAGATCTCAATGGTGGAGGCCGAGTTCTTTGACAAACTGGAAGCCATAGCCAGGTCCATAAGAAGATCAGCTGAGCCATTTGGAGGGATTCAGCTGATTGTGTGCGGAGACTTTCTTCAACTTCCACCTGTAACAAAAGGAAAGGACAAAGCTAACTTTTGTTTCCAGTCGAGAAGCTGGCGAAAGTGTATCCATATGAACATGGAGCTGACGGAGGTGCGCAGACAAACAGACAAAGCCTTCATTTCTCTCCTCCAGGCTGTGAGAGTGGGCAGAGTCACAGAGGAAGTTACCGTAAAGCTACTGAGAAGTGCCAATCACTGCATCGAGAGGGATGGTATCCTAGCAACCAGGCTGTGCACACACAAGGATGATGTGGAGCTCACGAATGAGAATAAACTCAAACAGTTACCAGGGGCCGTGCGGGTATTCGAAGCTGTGGATAGTGACCCTATGCTGGTTCAGACCATTGACGCACAGAGTCCAGTGAGTCGGCTGTTACAGCTGAAAGTGGGCGCTCAGGTTATGCTTACTAAAAACCTGGATGTCCAGAGGGGTCTAGTGAATGGAGCCAGAGGAGTAGTTGTTGACTTTCAGCCAGGCAATCAAGGTCTCCCTCGGGTGCGATTCCTCTGCGGGGCTGTTGAGGTAATGAAGAGAGAGCGTTGGATATTTAAAGCGTCGGGGGGGCTGTACCTGAGCCGACAGCAGCTGCCACTCAAACTGGCCTGGGCCATTTCAATCCACAAGAGTCAGGGCATGACTTTGGATTGTGTGGAGATCTCTTTGGCGCGTGTGTTTGAGAGCGGCCAGGCCTATGTTGCTCTGTCACGTGCTCGGAGTCTGGAGGGCCTGCGTGTGATGGACTTTGATCCTCGAGTGGTGCAGGCCAACCAGGACGTGCTGCTCTTTTATAAGAGACTGAGGAAAGAGAGGCTCCTAATGCAGGTCAGTCCACTTTAGGCAATCACTCTTTCTTCAGACGAATAACCTTTTCTTTTATACCAGACCAGCACAATTTAAAAGATTGAATCTAAATGATCTTAGATTGTCTTATAAAAGGCCCCGGGAAGCTCAGATTTACTGGATGATTTTACATTAGTTCTCAATCATTTCAGATTTCAAATTGCCCAATTTCAACAAGGTTAACAGTGATTTAGTAAGTTTATTATAGGTCTCTGATTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCCCCAGTCCTCAATGAATGACTTTGTTGGACAGAGCAATAAGGAGAATTACCCTTGGTGAGGAGGTGACGGGAAGCTCTTGTTTTCATATGCACTGTGTGCATGGATGCATCAGGAACATGAACTCATTTAATTCAGATAGTTTTTTTTCTTATTTGATAAATTATGCTGCTTTTCAGTTGAATATTTAATTTTTTTTTTTTTTTTTAATTGCTTTAAACCCTGTTTTATTTTGACCATGTATTTCTTTTAATAAA

Function

symbol description
pif1 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

GO:

id name namespace
GO:0006310 DNA recombination biological_process

KEGG:

id description
K15255 PIF1; ATP-dependent DNA helicase PIF1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03514180_03525227.mRNA True 2743 mRNA 0.45 11 3513673 3525582

Neighbor

gene id symbol gene type direction distance location
CI01000004_03505898_03508656 NSUN4 coding downstream 4903 3505798 ~ 3508770 (-)
CI01000004_03475454_03478135 NA coding downstream 34188 3474894 ~ 3479485 (-)
CI01000004_03433963_03436906 GADD45A, GADD45AA coding downstream 76767 3433832 ~ 3436906 (-)
CI01000004_03277921_03285364 FAM69AA, FAM69A coding downstream 228309 3277741 ~ 3285364 (-)
CI01000004_03244252_03265862 EVI5 coding downstream 247626 3243903 ~ 3266047 (-)
CI01000004_03556991_03559357 ARTN coding upstream 30900 3556482 ~ 3559357 (-)
CI01000004_03559459_03560064 NA coding upstream 33877 3559459 ~ 3560064 (-)
CI01000004_03588875_03589130 NA coding upstream 62394 3587976 ~ 3589253 (-)
CI01000004_03594612_03595116 NA coding upstream 68551 3594133 ~ 3595141 (-)
CI01000004_03612407_03645686 ST3GAL3B coding upstream 86396 3611978 ~ 3647464 (-)
G26854 NA non-coding downstream 106846 3406403 ~ 3406827 (-)
G26837 NA non-coding downstream 158201 3355215 ~ 3355472 (-)
G26811 NA non-coding downstream 158508 3342814 ~ 3355165 (-)
G26803 NA non-coding downstream 161749 3346000 ~ 3351924 (-)
G26812 NA non-coding downstream 181430 3330745 ~ 3332243 (-)
G26924 NA non-coding upstream 22892 3548474 ~ 3548695 (-)
G26948 NA non-coding upstream 131972 3657554 ~ 3657869 (-)
G26955 NA non-coding upstream 147357 3672939 ~ 3673155 (-)
G26902 NA non-coding upstream 293601 3819183 ~ 3929949 (-)
G26889 NA non-coding upstream 358783 3884365 ~ 3907456 (-)
G26788 NA other downstream 237952 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 1738732 1772928 ~ 1774942 (-)
G27746 NA other upstream 1652645 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 2094801 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 3009245 6538904 ~ 6541252 (-)
G29388 NA other upstream 3105711 6631293 ~ 6631907 (-)
G29656 NA other upstream 4438782 7964364 ~ 7965500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location