CI01000004_05001695_05020719 (NTNG1)


Basic Information

Item Value
gene id CI01000004_05001695_05020719
gene name NTNG1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5001617 ~ 5020807 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05001695_05020719.mRNA
ACTCTTCCTTCGTAAATTCCATGAGGAGCATATTCTGTCTTTGTCTAGGCAGAAGTAAAGAGAGCTTAATAAAGATGATTAATCAGACATGACGTTGAAGCCAGGCTTCCTCAGGCATTCCCTTGATCAGAGTCTAAACCATGAAACACTGAAATTGCATACATGGTTTTCAGTGCATTTTATCACAGGAAACAATTTGTTCTTTAAAAACTTGGTTGCAGAGACCATACGTGGAATAGGATATAATCTACATCGATCTTTCAATGGCCACCTTCAACACTGGTCACTCTATCCTCAAGTGCTAAGAGGAGAGCACGTATTGATTGTAATAAGGCAGCAGCTTTTGGTCAGGGAGCCATTGCAGGAGAATCCAGTGGAAGGTCTGGCCTTCTTTGTTACATTAAGCCACTCAGTATTGTCTATATCAGGGTATGAAAACCCATATATGTGTAATAACGAATGCGACGCTGAAACCGAGGAGCTGGCCCACCCGCCCGAGCTCATGTTTGACTCTGAAGGACGAAACCCCACCACATTCTGGCAGTCGACCTCCTGGAAGAAATATCCAAAGCCCCTTCAGGTCAACATCACACTGTCCTGGAACAAAACAATAGAACTCACAGATGACATTGTCCTTACCTTCGAGTCAGGCCGACCTGAGCAATTAGTCTTGGAGAAGTCACTGGATTACGGTCGTACGTGGCAGCCGTATCAGTTTTATGCAGCTGACTGTTTGGATGCCTTTACTATGGAGCCAAAAGCAGTACATCAGCTGACCCAAAGCAGTATGCTAGAAATCATCTGCACTGAGGTCTATTCAACAGGCTATGTGTGGAAGTACGACAAAACTGTACGTTTTGAGATCAAAGACCGCTTCGCCCTTCTTGCTGGCCCGAGACTGCACAACATGGCTTCTCTGTATGGGCAGCTGGACACCACCAAGAACCTAAGGGATTTCTTCACCCTCACTGACCTTCGCATCAGACTTCTACGGCCTGCCACCGGAGCCACAATGGTGGATGAGAACAACCTCTCTAGATACTTCTACGCCATCTCGGACATCAAAGTGCAGGGCAGAGTTTACATTTGGAGTCCAAGTCTGCTTCTCACTACAAAGACATCTAAGACTCTTCTAATCCTCAAGGCCAGAAGATGTGACCCACGCTTCTATTCAGTATCTCCACAGGGGCACAGTCAAATGAGCTCTGTTTTTAATGGCATAATGAAGCTCTCTTCCGCAGCATCATGGGAAGCCTACGTTAAAGGTGCAAGTGCAATCTCCATGCCAACAGCTGTGTTTTTGACAAAGGGAAGCTGGGGTGCGAGTGCGAACACAACACCACGGGGCCGGATTGTGCACGCTGCAAGAGACACTACCAGGGCCGAGCCTGGAGCATGGGCTCCTACCTGCCCATCCCCAAGGGTACTGCCAATATCTGTGAGTACATCCTGCCATCTCCCTCTCGACATGACTCATGGGAAAGCATAGTGCTCCATCAAGCACTGAAACGTGACCTTTTCAGTCCTGTTCCAAATGACATTTTACTTTCAGAACAACAACAAAAAA

Function

symbol description
ntng1 Enables cell-cell adhesion mediator activity. Involved in synaptic membrane adhesion. Located in plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05001695_05020719.mRNA True 1567 mRNA 0.47 6 5001617 5020807

Neighbor

gene id symbol gene type direction distance location
CI01000004_04980768_04988531 NA coding downstream 12079 4980552 ~ 4989538 (-)
CI01000004_04909539_04912655 NA coding downstream 88904 4909539 ~ 4912713 (-)
CI01000004_04906112_04907528 NA coding downstream 94089 4905244 ~ 4907528 (-)
CI01000004_04894515_04904347 SH3GLB1B coding downstream 96496 4894486 ~ 4905121 (-)
CI01000004_04748921_04753787 NA coding downstream 247830 4748778 ~ 4753787 (-)
CI01000004_05073667_05096493 NA coding upstream 52111 5072918 ~ 5097284 (-)
CI01000004_05113181_05116553 AMY2A coding upstream 92355 5113162 ~ 5116578 (-)
CI01000004_05232776_05234535 NA coding upstream 211622 5232429 ~ 5235527 (-)
CI01000004_05248429_05300603 ABCA4B, ABCA4 coding upstream 227622 5248429 ~ 5300603 (-)
CI01000004_05318592_05325105 NA coding upstream 297785 5318592 ~ 5325105 (-)
G27685 NA non-coding downstream 37389 4961931 ~ 4964228 (-)
G27672 NA non-coding downstream 109392 4891700 ~ 4892225 (-)
G27642 NA non-coding downstream 194076 4805698 ~ 4807541 (-)
G27615 NA non-coding downstream 226023 4773738 ~ 4775594 (-)
G27603 NA non-coding downstream 276512 4724532 ~ 4725105 (-)
G27740 NA non-coding upstream 123762 5144569 ~ 5153318 (-)
G27755 NA non-coding upstream 185949 5206756 ~ 5208585 (-)
G27859 NA non-coding upstream 219539 5240346 ~ 5245574 (-)
G27873 NA non-coding upstream 232867 5253674 ~ 5253923 (-)
G27890 NA non-coding upstream 276704 5297511 ~ 5297995 (-)
G26788 NA other downstream 1725896 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3226676 1772928 ~ 1774942 (-)
G27746 NA other upstream 157420 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 599576 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 1514020 6538904 ~ 6541252 (-)
G29388 NA other upstream 1610486 6631293 ~ 6631907 (-)
G29656 NA other upstream 2943557 7964364 ~ 7965500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015311 vav3b coding NC_007113.7 CM002886.2 15776156 ~ 15945153 (+)