CI01000004_05113181_05116553 (AMY2A)


Basic Information

Item Value
gene id CI01000004_05113181_05116553
gene name AMY2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5113162 ~ 5116578 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05113181_05116553.mRNA
AGGTTTTTCTCTGAACTAGGGAAGGATGAAGCTTCTAATCTTGGCAACATTGCTTGGACTGAGCCTCGCTCAGTTCGACCCAAACACCAAAGATGGAAGAACTGCCATCGTCCACCTGTTTGAGTGGCGCTGGACTGATATTGCAGCGGAGTGCGAGCGCTACCTCGGACCAAATGGCTTTGGTGGAGTTCAGATCTCCCCTCCAAGTGAGAACATTATTGTCACAAACCCCTGGCACCCTTGGTGGCAGAGATATCAGCCCATCGGTTACAATCTGTGTTCCAGATCAGGAAATGAAAATGAGCTGAGAGACATGATCACTAGGTGCAACAATGTTGGGGTGAACATCTACGTTGATGCAGTCATCAACCACATGTGTGGTGCGGGTGGTGGATCTGGTACCCACTCAAGCTGTGGATCATATTTCGATGCCAACAGCAAGGACTTCTCCTCAGTTCCATACTCATACTTGGACTTCAATGATGGCAAATGCTACACTGGCAGTGGAAACATTGAGAACTACCAGGATATCAACCAAGTGAGAAACTGTCGTCTGGTTGGTCTTCTGGACTTGGCTTTGGAGAAGGACTATGTGCGTGGTAAGGTGGCCGACTACATGAACAAGCTGATTGACATGGGAGTGGCTGGATTCAGAGTGGACGCCTGCAAGCACATGTGGCCTGGTGATCTTTCTGCTGTCTATGGCCGTCTTAATAATCTGAACACTAAGTGGTTTTCCTCTGGCGCAAGACCTTTTATCTTCCAAGAGGTTATTGATCTCGGTGGGGAGCCTATTACATCAAGTGAATACTATGGAATTGGAAGGGTGACTGAGTTCAAGTATGGTGCCAAGCTGGGCAATGTCATCCGCAAATGGAATGGAGAAAAACTATCCTACGTCAAGAACTGGGGTGAGGGCTGGGGCTTCATGCCTTCTGATAAAGCTCTTGTGTTTATTGACAATCATGATAACCAGAGAGGACATGGTGCTGGAGGTGCATCTATTGTGACATTCTGGGATTCCAGACTTTACAAAATGTCTGTAGCCTTTATGTTGGCCCACCCGTACGGATTCACCAGAGTAATGTCCAGCTACCGCTGGGACCGCAACATTGTGAACGGACAGGACCAAAATGACTGGATTGGACCTCCCAGCTATAGTGATGGGACCACCAAACCTGTTCCCATCAACGCTGACTCTACCTGCGGAGATGGCTGGGTTTGTGAGCACAGATGGCGTCAGATCAAAAACATGGTGATCTTCCGTAATGTTGTAAATGGACAGGCATTCTCTAACTGGTGGGACAATGGAAGCAACCAGATCTCTTTCAGCCGTGGTAATCGAGGGTTCCTTGTCATCAACAATGATGACTGGGAGCTGAATGAGACCCTGACCACTGGCCTGCCGGGAGGCACCTACTGTGATGTGATCTCTGGTCAGAAGGAAAATGGCAGATGCACTGGGAAAGAGGTGACGGTTGGAGGAGATGGAAGAGCTTACTTCAGAATCAGTAACCAGGAAGAAGACCCATTTATTGCCATTCACGCAGACTCAAAACTTTAAATGATGCTATTTAAATAAA

Function

symbol description
amy2a Predicted to enable alpha-amylase activity; alpha-amylase activity (releasing maltohexaose); and metal ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in pancreas. Orthologous to several human genes including AMY2A (amylase alpha 2A).

NR:

description
alpha amylase

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01176 AMY, amyA, malS; alpha-amylase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05113181_05116553.mRNA True 1583 mRNA 0.48 10 5113162 5116578

Neighbor

gene id symbol gene type direction distance location
CI01000004_05073667_05096493 NA coding downstream 15878 5072918 ~ 5097284 (-)
CI01000004_05001695_05020719 NTNG1 coding downstream 92355 5001617 ~ 5020807 (-)
CI01000004_04980768_04988531 NA coding downstream 123624 4980552 ~ 4989538 (-)
CI01000004_04909539_04912655 NA coding downstream 200449 4909539 ~ 4912713 (-)
CI01000004_04906112_04907528 NA coding downstream 205634 4905244 ~ 4907528 (-)
CI01000004_05232776_05234535 NA coding upstream 115851 5232429 ~ 5235527 (-)
CI01000004_05248429_05300603 ABCA4B, ABCA4 coding upstream 131851 5248429 ~ 5300603 (-)
CI01000004_05318592_05325105 NA coding upstream 202014 5318592 ~ 5325105 (-)
CI01000004_05337445_05339997 NA coding upstream 220335 5336913 ~ 5340567 (-)
CI01000004_05355484_05357726 NA coding upstream 238688 5355266 ~ 5357799 (-)
G27685 NA non-coding downstream 148934 4961931 ~ 4964228 (-)
G27672 NA non-coding downstream 220937 4891700 ~ 4892225 (-)
G27642 NA non-coding downstream 305621 4805698 ~ 4807541 (-)
G27615 NA non-coding downstream 337568 4773738 ~ 4775594 (-)
G27603 NA non-coding downstream 388057 4724532 ~ 4725105 (-)
G27740 NA non-coding upstream 27991 5144569 ~ 5153318 (-)
G27755 NA non-coding upstream 90178 5206756 ~ 5208585 (-)
G27859 NA non-coding upstream 123768 5240346 ~ 5245574 (-)
G27873 NA non-coding upstream 137096 5253674 ~ 5253923 (-)
G27890 NA non-coding upstream 180933 5297511 ~ 5297995 (-)
G26788 NA other downstream 1837441 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3338221 1772928 ~ 1774942 (-)
G27746 NA other upstream 61649 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 503805 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 1418249 6538904 ~ 6541252 (-)
G29388 NA other upstream 1514715 6631293 ~ 6631907 (-)
G29656 NA other upstream 2847786 7964364 ~ 7965500 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location