CI01000004_05355484_05357726


Basic Information

Item Value
gene id CI01000004_05355484_05357726
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5355266 ~ 5357799 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05355484_05357726.mRNA
AGAAACACTCTTCAGAGGGATAAGTTGGATAAAATATTTCACGGCCAAATTGGACTGTTTACTATCATAAACGATGGAGAGCAAGATTGTATTTTCGGCACTTTTTCTTGCCTGGCTTACTCTCGTAAACGGATCCCCAGCTGGTAGGGACAAACAGAGAAACCCTCACTGCATCAGAAGTACTGAGACAGAGTGCGACCTGACCAATGAATTGGACGTAAAGGGGGTTTATACTGCTGAAGTGCTCTCAGAGTCCCTGCGCGGGATGATTTCTGACCATGTGGAGCCTCCATACACCAGATCTAAGCAGTTCTGCCCTTATGAAGACACTTTAATTGGAATACCTGAGTTCAAGTTGACGAGTAAGGACAAAAAGATTGTGTTGATCATAAAGGACCCCATCACAGCTCTGCACAAAGATGGCAGATCACTGAACATCCGAGACATCTTTAAAAAAGAACTCCAGTACAAGATTGTGTACAACAAGGCTGGAAGCACAGGAAAACATCTGAAAACTGTGAAAGAGAACAGAGCAGAGTTCAGTAATCTAGATGAGGATCAGAGTTACTGCTTCAGTGTGGCTGCATATATCGGTTCCCGTAAAGGAGACAAGAGTTTAGGAGCGTGGAGCCTCCCCAAGTGCTCGTCACAGGAGCACAAAACCGTGTTTGATGTGTATGGACCGACTGTGATTGGAGGAGCAGCGCTTATTATACTGGCTTTTGTAATTGCTGTAATCGTTCTGATTGTGGTGTGCTGTAAGAGAGCAAGAAGAGAAAAAACAATGGCCAAGGAAACCATAGTCTAGACTCAAGAATCAATTTCTGCTGATCGAGCTGAGAACGGGGTGTACAGCTGGACTGTAACCGTTTTTGCGCTGAGAGGGACCGGTGTGTGCGAAGCACACCTGCAGTGCAGCACTGGACTGGTTTCTATGAAACACTAACACTACACGATATGTTATACGTATCGGACCATTGCTTTTATTTTTTATGGATAAATAGAACAGTGTATTTGTTTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05355484_05357726.mRNA True 1026 mRNA 0.44 5 5355266 5357799

Neighbor

gene id symbol gene type direction distance location
CI01000004_05337445_05339997 NA coding downstream 14699 5336913 ~ 5340567 (-)
CI01000004_05318592_05325105 NA coding downstream 30161 5318592 ~ 5325105 (-)
CI01000004_05248429_05300603 ABCA4B, ABCA4 coding downstream 54663 5248429 ~ 5300603 (-)
CI01000004_05232776_05234535 NA coding downstream 119739 5232429 ~ 5235527 (-)
CI01000004_05113181_05116553 AMY2A coding downstream 238688 5113162 ~ 5116578 (-)
CI01000004_05373464_05376608 CNN3B, CNN3.L, CNN3A, CNN3 coding upstream 15519 5373318 ~ 5376608 (-)
CI01000004_05482165_05486129 NA coding upstream 123847 5481646 ~ 5487860 (-)
CI01000004_05490354_05581387 DPYDB, DPYD coding upstream 132371 5490170 ~ 5581387 (-)
CI01000004_05617072_05627369 NA coding upstream 258845 5616644 ~ 5628289 (-)
CI01000004_05709639_05728550 NA coding upstream 350827 5708626 ~ 5728791 (-)
G27890 NA non-coding downstream 57271 5297511 ~ 5297995 (-)
G27873 NA non-coding downstream 101343 5253674 ~ 5253923 (-)
G27859 NA non-coding downstream 109692 5240346 ~ 5245574 (-)
G27755 NA non-coding downstream 146681 5206756 ~ 5208585 (-)
G27740 NA non-coding downstream 201948 5144569 ~ 5153318 (-)
G28026 NA non-coding upstream 86224 5444023 ~ 5444465 (-)
G28033 NA non-coding upstream 112362 5470161 ~ 5470610 (-)
G28102 NA non-coding upstream 281921 5639720 ~ 5639941 (-)
G28103 NA non-coding upstream 284064 5641863 ~ 5642098 (-)
G28117 NA non-coding upstream 303201 5661000 ~ 5661223 (-)
G27746 NA other downstream 151542 5178227 ~ 5203724 (-)
G26788 NA other downstream 2079545 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3580325 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 1177028 6538904 ~ 6541252 (-)
G29388 NA other upstream 1273494 6631293 ~ 6631907 (-)
G29656 NA other upstream 2606565 7964364 ~ 7965500 (-)
G29746 NA other upstream 2996699 8354498 ~ 8358127 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015304 f3b coding NC_007113.7 CM002886.2 15100742 ~ 15106968 (+)