CI01000004_05709639_05728550


Basic Information

Item Value
gene id CI01000004_05709639_05728550
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5708626 ~ 5728791 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05709639_05728550.mRNA
AGCTGGCCAGTCTGCGCGAGCTCTAACCCAATTCATTCTCATAGACTACAACGCACTTTACAGCGCCCTGACCGTCACTGACACAATGCGCTACTATTTCTGGCGGATTTACTAGGAGTGATAATGGAATAAGAGGAAATCATGCCAATGCTATCGTAGGAGACGAAGCCGAAGAACCTTCACTTATTTCCCAGAATCTGTATGACCCTTATCGACAATGCTTTACTTTCAGTTGGTGATCATGGCAGGGACTGTCATGCTGGCATACTACTTTGAGTACACCGATACTTTCAACGTGCACATCCAGGGATTTTTCTGTCATGATAATGCCTATACGAAGCCCTATCTCGGACCAGAGGAGTCCGGCGCGATCCCGCCAGCTATCCTGTACGCGGTGGTCGCAGGGGTTCCTGCACTTGTGGTGAGATGCAGCTGTTGCAGTGTGAGGGAGAGCAGACCAGACAACAATGGTTGCAGAAATAACCCGATGTTTATTTACACGGGAGAAATTGGACAATACAAGAAAAACATGAACTCAAAAATTACAGTGACAGAATCCGTGCTCTTCTTGCTGCAGTATGTCTCTGAGGATCTAGACAACCGAGAGAAGATCATTGTGATGGGCGACTGTTGTTACCTCAACCCTCTGGTCAGAAGGACATTTCGCTTTCTTGGTGTGTACGCTTTTGGCCTCTTTGCCACAGACATCTTTGTAAATGCCGGGCAGGTGGTAACAGGAAATCTGTCTCCATACTTCCTGACGGTGTGCAAACCCAACTACACAGCACTGGGGTGCCAACAGGTGGTGCGCTTCATCAACCAACAAGAAGCCTGCACAGGCAATGAGGATGATGTCTTGCGTGCTCGCAAATCCTTTCCATCCAAAGAGGCGGCCATCAGTGTTTATGCAGCTCTTTATGTTGCTACACAAAAACTTTCATCTGTCATATCCAAATGGCATTGTGTCATAGAGTTAGAAGAGAAGAGGAAAATCAATAGATCTGCCATGCCTAAGGGCTGCTCTATTACTTAATCACCTCGCTTTGCCTCCCTGTGATAGAATCTTAAAATGAAACTTTACCAGAAAATCTAAATTCTGCCACTATTTACTCACTCATTCTCATTTCAATCCCATTTGCTGTTATCTTTGTCCAGTGTAGCACAAAAGTACAAATTCACGAGCTTTAAAATACACCATAACTCTGACAAAGTTTGCATCTATTTTGCTTTAATATTTGACACCAAAATGACAAGTTCTATGAAACAAATCTTCAAAAATATCTACTTTTGTTTTCCACTGAAAAAATACCAGCATGAGATTTTAGAATGAGGTAAGTATATAATGACAGAATTATTAGCACTATATTGGTTATCATACAATATTACAGATTTTTTTTAAAAATATATATCAATATTGGTGGATATTGGATGTTTAATTGTCCGATATCAACCGATACTGATAAATAAATAAAAAAAAAATCTGTAATATCGTATAATAACCAACTTTTTTAGATTTAGATTGTCTAACACTCATGAAGTTAATATCGAAAAAACACAAATAATTTGTAATCTTTAGCTAATCTAAATGTTATACTGTACTGTTTTAAAGACTAATCCATTTGCAGCATTTAAATTGATTCATTTGAGTTTCTTTGTGTTGTATTTTAAATCTATTTAGACAAAATAGTATAGAATTCTAATATCGCCAATTTATCGACTTATTGTATTGGCCAGAATTTTAATACGTGAGCTTCCACAGGAACAGTTAAATGGAAGCTTGGTAGAATAACGTCTGTCTGAATGCCACTGGTGCTCTCTGTTCAAAACATTAAGAGTTGTACTTGATCAAACCAGTGAGATGAATTCAAGAACACCCCCCACCATGCCTTTGTCCACCTTCCCTCTTTCCCCTAGTGCTTGATTCTAGACTAAAGGAATGCAGGTTTTCTTCAAATACCAGACTAGCCTTCAAATGCCACCCTTCCAGTCAATGCCAATGTCTTGGATAAGTGAAACAATGTAGCTGAACCATGCAAATGAATTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05709639_05728550.mRNA True 2046 mRNA 0.40 5 5708626 5728791

Neighbor

gene id symbol gene type direction distance location
CI01000004_05617072_05627369 NA coding downstream 80337 5616644 ~ 5628289 (-)
CI01000004_05490354_05581387 DPYDB, DPYD coding downstream 127239 5490170 ~ 5581387 (-)
CI01000004_05482165_05486129 NA coding downstream 220766 5481646 ~ 5487860 (-)
CI01000004_05373464_05376608 CNN3B, CNN3.L, CNN3A, CNN3 coding downstream 332018 5373318 ~ 5376608 (-)
CI01000004_05355484_05357726 NA coding downstream 350827 5355266 ~ 5357799 (-)
CI01000004_05803106_05809498 NA coding upstream 74066 5802857 ~ 5809498 (-)
CI01000004_05843593_05862033 NA coding upstream 114715 5843506 ~ 5862544 (-)
CI01000004_05902667_05905718 NA coding upstream 173864 5902655 ~ 5906852 (-)
CI01000004_05942638_05967553 TPRA coding upstream 213813 5942604 ~ 5967553 (-)
CI01000004_05976527_05978831 PDCA coding upstream 246613 5975404 ~ 5979754 (-)
G28117 NA non-coding downstream 47403 5661000 ~ 5661223 (-)
G28103 NA non-coding downstream 66528 5641863 ~ 5642098 (-)
G28102 NA non-coding downstream 68685 5639720 ~ 5639941 (-)
G28033 NA non-coding downstream 238016 5470161 ~ 5470610 (-)
G28026 NA non-coding downstream 264161 5444023 ~ 5444465 (-)
G29077 NA non-coding upstream 18749 5747540 ~ 5750606 (-)
G29080 NA non-coding upstream 26093 5754884 ~ 5755185 (-)
G29081 NA non-coding upstream 33176 5761967 ~ 5762210 (-)
G29083 NA non-coding upstream 36808 5765599 ~ 5766032 (-)
G29084 NA non-coding upstream 40457 5769248 ~ 5769710 (-)
G27746 NA other downstream 504902 5178227 ~ 5203724 (-)
G26788 NA other downstream 2432905 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 3933685 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 806036 6538904 ~ 6541252 (-)
G29388 NA other upstream 902502 6631293 ~ 6631907 (-)
G29656 NA other upstream 2235573 7964364 ~ 7965500 (-)
G29746 NA other upstream 2625707 8354498 ~ 8358127 (-)
G30316 NA other upstream 3649146 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016296 plppr5a coding NC_007113.7 CM002886.2 20262479 ~ 20323901 (-)
bowfin (Amia calva) AMCG00005110 plppr5,LOC107739033,LOC107657749,LOC107677304,LOC107712819,LOC106578506 coding CM030140.1 CM030140.1 15465083 ~ 15492249 (+)