CI01000004_05843593_05862033


Basic Information

Item Value
gene id CI01000004_05843593_05862033
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5843506 ~ 5862544 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05843593_05862033.mRNA
AGCTCTTCTCTTTGAGAGCTTCACAAGACTTTCCAAGGAGCCGTGCCTGTGCTGTGTTAAAGTTCACTGATGCACGGCTTGAAGAGGAGTGATTAACCTGCTGTCTAGACAACAGGAGTCTGCTTAATTTGCCTACAGTCGCTTGCCCTTTCATCTGGGCCGTTAGGGGGGCTCCATCCACCTTCGTCTCCATCTCTTCCCTAAAACTGCCCTCCACTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTCTCATTCAAGTAGCAAAGTCTATCTCATCTTTAATGTCTAGGCTTGTCTTGAGTGTCTGAATTCATACACAGGCTGTGTGTTTTGAATTTCATTGTGTGTTTTCCTTACTGTCCTATTTTTTTCTGCTCTCAATTCTCTCTACTGTAATCATTCTCTCACTGTAAATGCTTGAGTCCAACATTGGAAACAAGACCTGTACAACAACAACATTTGACTAATATTAGTGCCTTGATAGTCATGACAGCTTTTATCCACAAGTTACACAGAGACGTGGTTGTGTCTGACAATAATTGCCATTGTTTACAGATTTTCCATGTTATCATGCAAGTGTGCAGCAGTGAAGCACTGTGTCTCTGTCTTTGCCAGGACAGCAGTGAGGGGAGGGAGGATTTCCAGAGGCAGCCAGACGAGGTAGCTCAGTGGTGGGGTGAATGGAGCAGCTGGTCCACCTGTTCCCGTACCTGTGGAGGAGGAGTGCGCTCTCAAGAGCGTCACTGTCTGCAGCAGAGAGCACCCAGAGGAATGTCATGTGGAATTAAAATCAATCCACTGGTCCACATGACACAGGGAATTCTGCTCAGAATGACAAACATATTTATAAAATGGCTTTTAGAGCAAATGGTCAAACATTTTGGGGAGATTCCACTGGAGATAAGGGCCCTGGCTGAGCCAGTCCAGCTGGCTCCCATTAGCACTTCCCAGTATGGTGGAGGCAGCGAAAGACTGACGTCGACCCACAACATCAACAGTTCCTTCTGCACTGGACCGTCCAAACAGTATCAGCTGTGTAAAAACCAGCCATGCCCAAACAGCAGAATCAGCTTCAAACAGCACCAGTGCTCTCAATTCAATGCCAAAGCCTTCGGCAGGAAGCACTATGAGTGGGTTCCACTTTATCCGGATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACCACAACCACAGGAGAAAGGCAGCTGTTGGTGCCTGCCCACGACGGGACGTTCTGCAGGGACGGCATCTACCAGGGTGTTTGCATCGAGGGACAGTGTCAGGTGGTAGGGTGTGATGGGAAATTGTATTCCAGTAAAACCATAGACAAATGTGGAGTCTGTGGTGGAAACGGTGGTTCTTGTTATCGTGTCTCAGGATCTTACCGGAAAGGGATCACACAGTTAGGTTATGTGTTCATAACCAATATACCAGTCGGTGCCACTGATATCCAAATCATAGAGCGGCGGAAAACTGAAAATATTTTGGCTCTGTCTGATGAAGCTGGTCACTTCTTCTTCAATGGGAACAGTGTGATTGACAATCCACAGAACTTCCATGTTGCTGGGACAGTCTTTAAGTATAGGAGGCCGGCTAACCTCTTCTCTGATGGCTTTGAGTACATCATGGCTCAGGGTCCCACCCATCAGGCCCTGAATGTCATGTATTACAACCTCAATGGAAAGATGCCTCACATCACATACGAGTACACAGTTCCTCGAGCTGCAGAGCTGAGGGCAGCACCTCCCATGGCCTCCACCCCTGAGCAACCTCAAATAAGCAACCTGATGTCAAAGACATCCAAAGACCCTTCACCGGCAGAGCAGAAGGTTAACACGTCCTCTACGGAGCTCTCCTCCACTCATAATGAAATCGAGGAATATGGAAAGAAAGACAATCAAAGCACTTCTTTGGTAGCACAAGATAATGATGAGGTGCATGTGGGCCATGAGGAGCTGTTGTGGGGACTTCAGGCCTCTGTAAACTTCAGCGAGCTCCCTGGTCTGGTGTTGTTTAGACCTGCCAGTGAGGTCCTCCAGAACGAGCTTGATGATGAAATGCACCATCTTGAGGCACAAGGCAGTTTTGGCCCTGATTCCAACTTGATTGATGGTGATTCGTCTAGTTCCAGTGACTCCAATCACACCTCTATGCCAGTTCTGAAGAGTCTCTTCTATGATGGGGCGTCATGGCCTTCAGGCTCCAGACAGCCCTGTAAAGACGGTTCTGCACTCTCAGGTTGTGCCATTATCAAGCTCAACTCCAGCTCTTCACTGGACAACAGCCTGACACTGGAGATTTACCCGGGCAGCCTGGACTTGCACGGTTCAGATGGAGAGCCTCAGTCTGAGCCCAGGACTAATGACTCCACAAACCACCAGTCCAACCTTCTCCAGCTCCACCAGGTGGAGCCAGTGCAGACCCCCCACAGTGAGAGTAATGAGTTTGAGGTGGAATCTCTGGATCATGACATCAGCATGTCCGACGTGTACAGATGGAAGGTATCTGCGTATGCACCGTGCAGCTCAACATGTACCACAGGTATAAGCACTTCCTATGCCTTATGTGTGAAGTATGATGGGTCAGAGGTGGATGAGAGCTACTGTGATGCTTTGACCAGGCCGGAGCCCACACATGAGTTCTGCACAGGGAAAGAGTGCCTGCCCAGGTGGGAAACTAGTCGCTGGAGCGAGTGTTCACGTACATGTGGGGAGGGGTTTCAGTTCCGCACGGTGCGCTGCTGGAAGATGATGGCGCCGGGATTTGACAGCTCTGTGTATGATGAGCTGTGTCAGGCTGCGGAGCTGCAGAAGCCCATGACACGGAAAGCCTGCAAGAGCAAAAGCTGCGGCCCGCAGTGGGAGATCTCAGACTGGTCCGAGTGTTCAGCACGGTGTGGCGGTCGTGGGGTGAGGAGCCGTGAGGTGCGCTGCTCCATGGAGGCCAGATTCTGTAATGAGTCAACCAGACCAGTCAGCCAGAGAGAGTGTGAGGGGCCGCCCTGTGACCGCAGGTGGACCGTCTCTGACTGGGGGCCGTGCTCAGGGCCGTGTGGGGAAGGCAGGATGAGACGCTACGTGGTGTGTAAGAACAGTAATGGGAAGGTGATTTCCGATGGACAGTGCGATCCAGAGCTCAAACCGCTGGCGGTGCATCCGTGCGGAGACAAAAACTGCCACCCCCACTGGGTGGAGCAAGAGTGGGAACAGTGCAGTAAGACATGTGGGATTGGAGTGCGTGTGCGAGAGGTCAAGTGTTATCAAGGAGAAGAACTGGGCCATAGCTGTGATTCAACACTGAGACCAGAGGCCAGGCAGAGCTGTGAGGTGCAGCCCTGCACCACTGGACCACCAGCTGAGGATGCTTGTCTGGATAAAGCGACAGCTAACTGTGCCCTTGTCCTGCGGGAACAAGAGCCAGTAAAGGCTGTCTGGCTCCTCAACTGTGGCCTTGCAGTTAATGTGAAGACCCTCCTCCACATACTGGACGCACTGAACCCAGAACTGTACCACTGCCTGACCATAGTCCAGCCCTACACCCCTCATTGCTGTCGCTCTCTCCTCCATAAAGAAAGGTGCTATATCAAAAGGGCACTGGCCCTTAAGTGGTCCTGCAGGGACCTAGTAAAGGCAGCTCCTATAACTGGACTGCAGAGGAGCCGTGGGTCTACTGATGATAGAGACACACTGTCCTCTGATCAAACAACTGTACAGGTTCCTCCTGTGTACTGTAGAAGCCTTGATTCTGCTCTTACACACTTTTAAACACATCGTATGATATATGTACAAAGTTTGTTTGTTTTGTTTTTGTTTGTATTTTGTGTCCACTTTTGATCTAGAAGAAGAAATAAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05843593_05862033.mRNA True 3889 mRNA 0.50 18 5843506 5862544

Neighbor

gene id symbol gene type direction distance location
CI01000004_05803106_05809498 NA coding downstream 34008 5802857 ~ 5809498 (-)
CI01000004_05709639_05728550 NA coding downstream 114715 5708626 ~ 5728791 (-)
CI01000004_05617072_05627369 NA coding downstream 215217 5616644 ~ 5628289 (-)
CI01000004_05490354_05581387 DPYDB, DPYD coding downstream 262119 5490170 ~ 5581387 (-)
CI01000004_05482165_05486129 NA coding downstream 355646 5481646 ~ 5487860 (-)
CI01000004_05902667_05905718 NA coding upstream 40111 5902655 ~ 5906852 (-)
CI01000004_05942638_05967553 TPRA coding upstream 80060 5942604 ~ 5967553 (-)
CI01000004_05976527_05978831 PDCA coding upstream 112860 5975404 ~ 5979754 (-)
CI01000004_06016711_06021356 PTGS2, PTGS2A coding upstream 153838 6016382 ~ 6021356 (-)
CI01000004_06074774_06078306 RNF2.L, RNF2 coding upstream 212125 6074669 ~ 6079254 (-)
G29132 NA non-coding downstream 209 5839522 ~ 5843297 (-)
G29130 NA non-coding downstream 5204 5838097 ~ 5838302 (-)
G29129 NA non-coding downstream 6601 5836647 ~ 5836905 (-)
G29111 NA non-coding downstream 12953 5827697 ~ 5830553 (-)
G29091 NA non-coding downstream 50808 5784288 ~ 5792698 (-)
G29153 NA non-coding upstream 105934 5968478 ~ 5969129 (-)
G29172 NA non-coding upstream 181816 6044360 ~ 6045307 (-)
G29233 NA non-coding upstream 313152 6175696 ~ 6175900 (-)
G29208 NA non-coding upstream 422933 6285477 ~ 6298068 (-)
G29188 NA non-coding upstream 537095 6399639 ~ 6403721 (-)
G27746 NA other downstream 639782 5178227 ~ 5203724 (-)
G26788 NA other downstream 2567785 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4068565 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 672283 6538904 ~ 6541252 (-)
G29388 NA other upstream 768749 6631293 ~ 6631907 (-)
G29656 NA other upstream 2101820 7964364 ~ 7965500 (-)
G29746 NA other upstream 2491954 8354498 ~ 8358127 (-)
G30316 NA other upstream 3515393 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005104 NA coding CM030140.1 CM030140.1 15258397 ~ 15284450 (+)