CI01000004_05902667_05905718


Basic Information

Item Value
gene id CI01000004_05902667_05905718
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5902655 ~ 5906852 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05902667_05905718.mRNA
AAAGACTTCTAATCCCAATGTAGTCTAATATCTCAGTCAGTTTCTTTATGTAAGTGAAAAAGACAGCATGTGTCTGATATGGGGTGCAGTGGACTGGACTCTTTCACTCCTGTTTAAATGTCATAGTGTTGGCTTTCATCAAGCACATGCAGGACAGCCAAAAGCCTTCCAAAAGGGCAGAACTACAGGTCTAGAACACACCATGGGAACTTGATAGTATGCAAATGAAATTTAAAGCTCAAATAAAATCTAATACAGTGCAGTTCCCTGAGTTGGCAATTTGTACAGCTTCTATAAATGCTGTTTTGAACTGCTTTAGTAACGGTTCTACAATAAATCAAGCCTGTGTTCTTGAGGAACTTCTGCTGAACATGCTGATGGTATATTACTACAAAACTAGAAAGGTCTGTCTAAAAACAAAGCAGACTGTAGGCCAGTTGTAAGTTTGTGAGAATGTGTCTGAAGGGTTCATTTTTACATTTGATTTGCTAATGTCAATTATATAGGCCTTATGTTTAACTATTGTCCCCAGAAGCTAGCTAAATCAGATTAAAAACTCAATTGAAGTCCTCAAATGAACAAAAATAACATGAATAATGTTTTTTTATTATTTTAAAAATGCAGAAAATGCAATCAGATGCAAATATGAATTCCTTAATATGCTTAGCCTACAGAATTATGTAATCTTTATTTAGCAAAATAAATCACATAGACAAGAATGACAAGACTTAGCTAAACAAATCATACCACGTCAATGTTGCAATCTCAACGAAGTATTTATTTCCTATTAACGCCATCTAGAGGTATTGTGAAGCCATAATTTAATAGCGTTCCGTCCGGAACTAACAAGTTCATTTTGTTTCCCACGGAGGTTTTTAGTTTACTGGACCTCTTTCTTGACAACAAGTTGCATGTGAGTTCAGTAACGTTGATGTTTACATTAAAGTTATCCTTAGAAGGGCTGCGGCCTGAATGCCTTTTAAGTAATAAAATCTACAAATTCTCTCTTATGAATTTATATAAAAATTAAAAAAATAGCCTTGGAAATGTAGCAGTTATTAACAGACCTGTAGCTAAGTTGCACTCTCCGTGCATATTGAAATAAAAAGTGATGTTGTGTTTATCCAGTAAACCATGATAGGAGTGGAGGCTGGACTCTACATCGGATCTGTGTCCGATGTGAAGGATGCTCAGAGCCTGACAGACGCGGGTGTAACGCACATACTCACCGTAGACGCAGAGGAACCTTCTGTGACTGGATTCCACACGAAATTTGTCCGAGCTCTGGATGATGCGTCCACAGATCTCCTGAGCAGACTGGACGACTGTGATGCATATTCCAAACTCCAAAACTTAAAACCAGATGTTAAAATGAATGAAGAGTTTCTGGACCAGCTGGCACTTTATGAATTAATGGACTGTAAAGTAGATACCACAAATCCTTTATACAAACAGTTTAGATTGAAGAAAATTACAGAGAAATATCCAGAGCTCCAGAATGTGCCAAAAGATGTCTTCGCTGTTGACCCTGCACAAACCCAGAATGCAGAAGCTGTGTACAGATGTAGAAAGTGCAGACGCACACTTTTCCGTCACTCCAGTATTCTCAGTCACTGTGTGGGAGGAGGAGCCTCTGCGTTCTTTCATAAGAAGACGAGGATAGTGAGCCCTGCAGCTGAAGATCAGAAACAGTGCACATCCTACTTTATAGAGCCGGTGCAATGGATGGAGCAGGCCTTACTAGGTGTTATGGATGGACAGCTTTTGTGTCCCAAGTGCAGCTCAAAGCTGGGCTCGTTTAACTGGTACGGTGAACAGTGTTCGTGTGGGCGCTGGGTGACACCGGCCTTCCAGATGCACAAGAACAGAGTGGATGAAATCAAACACATCAGTATATCTGCACTTAAATGACCCACAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05902667_05905718.mRNA True 1923 mRNA 0.39 6 5902655 5906852

Neighbor

gene id symbol gene type direction distance location
CI01000004_05843593_05862033 NA coding downstream 40111 5843506 ~ 5862544 (-)
CI01000004_05803106_05809498 NA coding downstream 93157 5802857 ~ 5809498 (-)
CI01000004_05709639_05728550 NA coding downstream 173864 5708626 ~ 5728791 (-)
CI01000004_05617072_05627369 NA coding downstream 274366 5616644 ~ 5628289 (-)
CI01000004_05490354_05581387 DPYDB, DPYD coding downstream 321268 5490170 ~ 5581387 (-)
CI01000004_05942638_05967553 TPRA coding upstream 35752 5942604 ~ 5967553 (-)
CI01000004_05976527_05978831 PDCA coding upstream 68552 5975404 ~ 5979754 (-)
CI01000004_06016711_06021356 PTGS2, PTGS2A coding upstream 109530 6016382 ~ 6021356 (-)
CI01000004_06074774_06078306 RNF2.L, RNF2 coding upstream 167817 6074669 ~ 6079254 (-)
CI01000004_06121326_06137773 NA coding upstream 214434 6121286 ~ 6137773 (-)
G29132 NA non-coding downstream 59358 5839522 ~ 5843297 (-)
G29130 NA non-coding downstream 64353 5838097 ~ 5838302 (-)
G29129 NA non-coding downstream 65750 5836647 ~ 5836905 (-)
G29111 NA non-coding downstream 72102 5827697 ~ 5830553 (-)
G29091 NA non-coding downstream 109957 5784288 ~ 5792698 (-)
G29153 NA non-coding upstream 61626 5968478 ~ 5969129 (-)
G29172 NA non-coding upstream 137508 6044360 ~ 6045307 (-)
G29233 NA non-coding upstream 268844 6175696 ~ 6175900 (-)
G29208 NA non-coding upstream 378625 6285477 ~ 6298068 (-)
G29188 NA non-coding upstream 492787 6399639 ~ 6403721 (-)
G27746 NA other downstream 698931 5178227 ~ 5203724 (-)
G26788 NA other downstream 2626934 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4127714 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 627975 6538904 ~ 6541252 (-)
G29388 NA other upstream 724441 6631293 ~ 6631907 (-)
G29656 NA other upstream 2057512 7964364 ~ 7965500 (-)
G29746 NA other upstream 2447646 8354498 ~ 8358127 (-)
G30316 NA other upstream 3471085 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location