CI01000004_05942638_05967553 (TPRA)


Basic Information

Item Value
gene id CI01000004_05942638_05967553
gene name TPRA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 5942604 ~ 5967553 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_05942638_05967553.mRNA
ATGGCGGCACTTCTTCAGCAAACACTGGAGAGAAGTGAGATAAACAAACTGCCGAAAGCCATTCAGAACAAGCTCGAGAAGGTTCTGTCAGAGCAGCAGACGGAAATAGACTCGCTGAAATCACAGCACGAGCGGTATAAAGCAGACTGTGAGCAACAGTACTTTAATCTTGAGAAGAAGCTAGCTGAGAGTCAGGAGCAGTTCTTGTCCCAAAGTAAAGAGTATCACAGTATTAAGGAGGAGAACAGCCGTCTCTCCGAGGAGCTTAAGAAGTTGAAAGATATAGAGGAAGAGCAGGGAACAACGCAAGAGAGTACGCCACCAAGAGCCAAATATGAAATTGAGGCAGAAAACCGAGAGCTCTCACGGATGCTTGAGAAGAGATCTCAAGAAGTGGAAAACCTCAGTGAGGATCTCAAACGTCTCAATGACAAACTCGTGGAGACGAGCACAATCAAGATGGAGCTCCAGCTTAAACTAGATGAACTTCAGTCATCTGAGGTTTCCATTCAGCATCGTGAGAAACGAATGGAACAAGAAAAGGAGCTTCTCCAGAACCAGAACACATGGCTGAATTCAGAGCTGAAGAGTAAGACAGATGAGCTGTACACAGTATCCAGAGACAAGGGCAAAGAGATCCTGGAGCTCAGGTGCTCTTTAGAGACCAAGAAGGAAGAGGTGACCAGACTTCAGGACCAAGTGAACACGCTCAAGAAAAACAATGAAAACATGCAGAAGAGTACCGAGGATCTGATGAATAAACTCAAAGAGGCTAAAGAACAACGGGCCTCCATGGAGGAAAAGTACCGCAATGAGCTGAATGCTAACCTTAGACTCTGTAAATTGTACAAGGATGCAGCAGCAGATTCTGAAGCCAAGAATGCTGAATTGAACAGAGCTGTTGAAGAGCTCAACAAACTGCTGAAGGAGGCGATGGAAGCAAATAAAGGCACAGAGAAGAAGCTGGCAGAATTGCAGGGTGTGAGGGAGAAAGCAGAGTCTGATCTACATGAGAAGGTCAGGAATCTGGAGAAAGAGCTGGAGAATGCCAACACACGCCTTGCAGAATTTAAAAGGAGAGGTGTTCCAGCTCTCACAGAAGAGGAGCTGACAAACCTCTCGCCAACTGCAGCTGCAGTGGCCAAGATTGTTAAGCCGGGCATGAAGCTAATGGAGCTGTATAACGCCTTTGTGGAGGCGCAAGACCAGCTGCACCTGGAGAAACTGGAGAGCAAGCGTGTGAACAAGGTTCTGGATGAGATAGTTCTGGAGGTGGAGACCAAAGCTCCCATCCTGAAACGCCAGAGAGAGGAATATGAGAACATGCAGAAGTCCATGACTAGCCTCTGTGCCAAACTGGAGCAAGCTATGAAGGAGGTCCATCGGCTGCAGAAGGAGACAGATGAAGCCAATAAGAGAGCTTTAGGGCTAGAGAGAGATAATCAGAGATCAAAGAGACAACTAGCAGACATGTCTGAACAGGTAAGTGTGCTGCTGGTGGAGGTGGAGGAGGCACGTGGTAATCAGGTGGTGCGTGAGGACTTGAGCTCGGCTGTGAGCAGCAGCTCTGAAGTCCAGGGCTCACGGCAGGTGGCCTTCCGCAGCGTCCAAGAGCTTCAGCAGCAAAACCAGAACCTTCTGGCCCAGATCAGAGACCTGGAGGAGCAGAGAGAGAGGGATCAGAACCAGGCTAAGACTGCCAGACAAACAGAGTTGGAACAGAGTCTGGAGAAAGTTCAGAAGGAACTGGAGCAGATCAAAGAACAGCAAAACCATCAGAAGCATCTGGCTGACTCTGCCATCCGACAAAGAGACATGTATCGTATCCTGTTGCAGACAGCCGGAGTTGAGCTTCCACCACAAGGTTCAGAGGCTGGGTCTCAGTCCACCACTCCCAACAGGCCAGGACCCATGTCCACCAGATCTACACCCCTGAGGTCTGCGGCTTCAGAATCTGTCCAGGCAACTCAGGCTAAAGCAGCACTTAAACAGCTTAATGATGCCTTCATAACATATAAAAAGGAGAAGGCAGAAAACGACAAGCTTCTGAACGAACAGATTGAGAGGCTTCGTGGTCAAGTGTCTGATCTGCTTTCACAAAAGGCTAAACTTTCCTCTCAGCTGGAGTTCGCATTTAAACGGTATGAGATGCTTCAGGAGAATGTCAATGGCTTTCGAAGAGAGACTGAAGCCCTGAGGGAGAAGAATCAAAAGATGAGTGCCACTCATCAGAGACATGAGCAAATCATTCACACAATGACTCAAGATCTGAGGGAGGCCAATGAGAAACTAACCATGGCTGAGTTGCGCGTTGAGAATATCCGTAAGGAACGAGACATTCTGAAGCAGGTGGAGAACAGACTGTCCCAGGAGAAGGAGTCTGTCCTGACCGAGCAGCGGGGCCAGAATCTCCTGCTCACCAACCTCAAATCCATTCAGCTTATGACGGAGCGCTCTGAGACTGAGACCAAGCAGCGCTACAATAACCATATCCAGCGTCTGGAGAAGGAGATTATCCAGTTAAAGAAGAAACTGGAACAGGAGGTGGAACAGAGACACGCACTGGAACGCAACCAAGACGCTCAGCTGCTGGAGGTTAAGAAGCAGTTGGAGGCACAGACAGCACTACATCAGAAAACTAAAGAGCTGCTAAGAACTGCTGAACAGCAGGCCACCTCCATGAGACAGCAACTGAACAACGACAACCTTGGCACAGCACCTAAACAGCCTGTCAGGACGTTACCCAGAGTTTCAGCTCCTGGCGTTCCTCAGCAGGAGGTAGATGAGCTCCAAGCACGTCTACAGCAGGCTGAAGAACAGAACTCTGACCTGAAGGAGCGTTTGAAGAATACCACCACCAATGTAGAACAGTACAGATCCATGGTGCTCAGCTTGGAGGAGTCTGTAAACAAAGAGAAGCAGTTGGCTGAGCAGGTACGGACCTCCATTGACAGCCAGCTGAAAACTGCACGGGAGTTGAACCAGCAGCTGGAAGCCCGGCTGCTGGAAGCAGAGAAGGAAAAGCTGGAGCTTCAGGAGGAGAAGATGAAAGCTGTAGAGAGTGTTGAAGAACGGGTGAAGGAACTGAAGAGGAGCGTGACGGACATGCAGACAGAGCTGCAGGATGCCCTGCAGAGAGCTGCGGCAGCAGTGGCCCAGGAGCAGAGAGCCACACAGGATAGCAAACTACAGGTGGGCGTGACACTCCTGGATCAAGTCAGGATTGTTTCTTCACACAGCTACCCACTGATTTTCTTGGATGTTTACTCACCTGTGTCTTATTTCTGGCCCAAGGCTAAGCTGGCTGCAGAGGCTCAGAATAAATATGAGCGAGAGCTCATGCTGCACGCTGCGGATGTGGAAGCCCTTCAGACAGCCAAGAAACAGGGACAGTTGTCAGCGCAGAACCTGAAGCAGCTAGAGGATAAGGCTCAGAAAGCTGCATCTGAACTGCATCAGGGTCGCACAAACTGGGAACACCAAGAGAAGAGACTGAGGGAAGAACTTTCTAAAGAGCAGAAGAGAGCTGAGGAGCTGCAGAAGCAGAACACCATGCTCCATGAGCAGATGGAGAACCTGAGCAGCAAGATAACTGCCTCCACCCAGCAGCAGACCGCTAAAGAGAGCAGTCTGAACATCTCTCTGAACGAGGAGGGCAAATCTCATGAGCAGATCCTGGACATCCTCAGGTTTGTACGGCGGGAGAAGGAGATTGCTGAGACCCGGTTGGAAGTGGCGGAGGTGGAGACCCTGCGCTATAAACAGCGCATGGAGTACCTAGAGGGAGAGCTGAAGGAACTACAGGACAGCCTAAATGCAGAGAGAGAAAAGCTACAGATACGTAAGCTGGAAGCAGATATCAAGCCCCTACTGGACTCCAATGCTGAGCTGAGTGAGAAGAGTGGCATGTTGCAGGCTGAGAAGAAACTCCTGGAGGACGATGTCAAGCGTTTGAAGGCCCGCACACAGCAACTGCTGAGTCAGCAGAAGGACACCGATCAGGAGGAAAGTAAGAAACTGAATTCTGAGAGAGAGGCCCATCTCAAACGCATCCAGCAGCTCACAGAGGAGACGGGGAAGCTCAAGAATGAGGTGGCCAGGAGCCAAGCTTCAATCACTACAGCTCAGAGCCAGGTGCAGAACCTGCAGGATAGCCTTGGGAAGGTCACTACTGAAAGGGATAGTCTGAAGAAGGAGCTGGAGGCAAAGACCCTGGACATCCAGGAGAAACTCAAAACTATCACGCAGGTCAAGAAAATAGGCCGTCGCTACAAAACCCAGTTCGAAGAGCTCAAAGAACAGCATGATAAGATGGTGGCAGAGGCTGCTTCTAAGCCAGCACAGGAGCAGGAAGACCGTCAGGCCTCGGTGCAGGAGATTCAGAACCTGAAGAGTTCATTGAGTCAGGCGCAGAACAGATCCTCAGAGCTGGAAACTCAGCTGGAAAGCATACAGAAGGAGCGTGAAGTGGAGGTGAAGAGCCTGCAGGAGCAGTTGGCACAGGTGCAGCCAGAGCTCAACCGTCTGAGAGCAGAGCTACAGGAGAAGGGTAACCTGGAGGAGCAGCTCCGACAGCAGATCGCTGATAAAGAAGAGAAGACCAAGAAAGCTTTCATGGGTGCCAAGCAGAAGATCAACCAGCTCAACAGTGTAAAGGAGCAGCTGGTGAAAGAGAATGAGGAGCTGAAGCAGCAGAGAGAGGAGCTGGAGGTGAGGATGAGTGCACTCAAGTCACAGTATGAAGGCCGTTTGAGCCGACAGGAGAGAGAGCTGAGAGAACTCCGTGAGCAACAGGAGAGACACGGAGAACAGAGAGATGAAGCTCAGGAGCCAGGCCAGAGCAAGGTTCAAGAAGCACAGAGGTCATCAGATCCTCGACAGATCACTCTCAAACCCACACCTACTACTGACAGGGGAAGTGCCAGTACATCCGAGCCGCCCACTGCTAACATCAAGCCCACACCAGTTGCTGCCACCCCCAGCAAGCCTTCGCCAATTGCAGGGAGCAAGTCCACCCCGAGGGCAAGCATTCGCCCAATGGTAACACCCGCTCCTGTAACCACGCCCACAGCCACAGTCATGCCCACCACACAGGTCGAAACACAGGAAGGTATGGCTCGAGCTCTGCAGTCCATAGAGGGTCCACTGGAGCATGTGACTGTCTTTGGCAGCACCAGTGGCTCAGTGCGCTCCACCAGCCCTAACATACAGACCACGCAGCCAATCCTCAGCCTGCAGCAGAACCAAGCCACCGCTTTTGTCCAGCCCACTCAGCAGCAGGCCAGTCAGGAACCAGCAACCACCATTATGGAGGCAGTACATAGCTCACAGATGGAGAGGCCGTCCACTTCCACTGCTGTCTTTGGTACAGTGTCAGCAACAGCTGGCTCATCTGTGCCCAAGCGAGTGCGAGAGGAAGAGCAGGAGAGCTCCACTGAGGTGTCCGACACCACACAGGACGACCCGACCCACCCACCCATCAATAAGAAGATCCGCATCATAAGAAGAGTGGGCCTGGAGGATGCTTCAGGTACTGAGGAGAGTAATGATGCTATGGGTGAAGCTTCAGGAGAAGTCCAGCAGCCTTCTGATGCCAGTGAGGAAGCATATCCCGTGTTAGCAGAGGGAGATGAAGAATCTTTGTCTCAGTCTGTCCCAATGGATCAGGTGAGTGAGTCCCAACCATCCGAGTCTCAGATCAGCGGACAGGACTCATCCGAGGAGTATAAGCATGACGTCATCATCATAGAGACAGATAGTGGCACTGAGGAGGAAGAGGAGGAGCAGGAGGGGCCTGGACAGGGTGGTGGGGCAGCTGATCCAGGAATTGACAATGAAGAGAGTCAAGAAGCATCTGGGTCAATCCAGAAGCAAGCGGACTCTCAGAGCAGTGGTGAAGCTAGTGTCAGCACCTTGGAGGCCTTCCCTACTGAGCCTGTGAGAGAGCACCAGCCAGTCCCCAGCACCACCACCTCCTGCTTGGGCCCACGGCTGCCCCAATCCCCTCGGAGACCACATCACACCCCACCCCCACGTCTCAACATCCACCCCATCCCTGAGCTTGGACCTCCCATCATGCAGCAACACTTCTTTGATGATGATGACAGAATGGTTCCAAGCACTCCCACCCTTGTTGTGCCACACCGCACAGACGGCTTTGCAGAGGCCATTCATTCCCCTCAGGTGGCCGGAGTTCCTCGTTTCCGTTTCGGCCCTCCTGAGGACATGATGCCTCAGGCTAGCTCCTCTCATTCTGACTTGAGCCATCTGGCCACACATGGAGGGTTAGGCATGTATGAAAGTCCTCTCTTCCTGCCCGCTCACGATGAAGAATCTGGAGGCAGGAGTGTCCCCACCACCCCTCTACAAGTGGCTGCTCCAGTGACAGTGTTCACAGAGAGTCACCCCTCTGATGTGTCGGAGACAGCCTCTCAGTCGGTTCCCATGGTGAGCACGTCCACCGGCAGTCTTACCACACCAGGGGAAGCTGTCCCGGGAGATGATGGAGATGATGTCTTTGTGGCCGAGGCTGAGAGTGAAGGGGCGAGTAGTGAGGCGTGTCTAGAGGGCCAGTCGGAGCTGGAGTCCACTCAGCCGCTCGATGATGCCAGCCTGCCCTCCACTAGTCAAGAGCCCACATCCAGCTCCGCAGATACCAGCACTAGCACCAGTACTGGTCAGGCCAAGCCTGCAAGCCGACTCCTTCCTCAGCACCAGCTGCCCCGGAGGAGCCAGCTCATCAGGAGAGGTATTGATTTTCCTCGTGGAGGCCGGGGTCGAGGACTCAACAGAGGCACTCCCATCTAAACCCAGCGTCTGCCCAGCAGAAACTCAGATTACA

Function

symbol description
tpra Predicted to be a structural constituent of nuclear pore. Predicted to be involved in mRNA export from nucleus and regulation of mitotic spindle assembly. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Orthologous to human TPR (translocated promoter region, nuclear basket protein).

GO:

id name namespace
GO:0005643 nuclear pore cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_05942638_05967553.mRNA True 6841 mRNA 0.52 47 5942604 5967553

Neighbor

gene id symbol gene type direction distance location
CI01000004_05902667_05905718 NA coding downstream 35752 5902655 ~ 5906852 (-)
CI01000004_05843593_05862033 NA coding downstream 80060 5843506 ~ 5862544 (-)
CI01000004_05803106_05809498 NA coding downstream 133106 5802857 ~ 5809498 (-)
CI01000004_05709639_05728550 NA coding downstream 213813 5708626 ~ 5728791 (-)
CI01000004_05617072_05627369 NA coding downstream 314315 5616644 ~ 5628289 (-)
CI01000004_05976527_05978831 PDCA coding upstream 7851 5975404 ~ 5979754 (-)
CI01000004_06016711_06021356 PTGS2, PTGS2A coding upstream 48829 6016382 ~ 6021356 (-)
CI01000004_06074774_06078306 RNF2.L, RNF2 coding upstream 107116 6074669 ~ 6079254 (-)
CI01000004_06121326_06137773 NA coding upstream 153733 6121286 ~ 6137773 (-)
CI01000004_06183916_06192361 MFSD12A coding upstream 215577 6183130 ~ 6193478 (-)
G29132 NA non-coding downstream 99307 5839522 ~ 5843297 (-)
G29130 NA non-coding downstream 104302 5838097 ~ 5838302 (-)
G29129 NA non-coding downstream 105699 5836647 ~ 5836905 (-)
G29111 NA non-coding downstream 112051 5827697 ~ 5830553 (-)
G29091 NA non-coding downstream 149906 5784288 ~ 5792698 (-)
G29153 NA non-coding upstream 925 5968478 ~ 5969129 (-)
G29172 NA non-coding upstream 76807 6044360 ~ 6045307 (-)
G29233 NA non-coding upstream 208143 6175696 ~ 6175900 (-)
G29208 NA non-coding upstream 317924 6285477 ~ 6298068 (-)
G29188 NA non-coding upstream 432086 6399639 ~ 6403721 (-)
G27746 NA other downstream 738880 5178227 ~ 5203724 (-)
G26788 NA other downstream 2666883 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4167663 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 567274 6538904 ~ 6541252 (-)
G29388 NA other upstream 663740 6631293 ~ 6631907 (-)
G29656 NA other upstream 1996811 7964364 ~ 7965500 (-)
G29746 NA other upstream 2386945 8354498 ~ 8358127 (-)
G30316 NA other upstream 3410384 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016305 tpra coding NC_007113.7 CM002886.2 20811677 ~ 20866758 (-)