CI01000004_06074774_06078306 (RNF2.L, RNF2)


Basic Information

Item Value
gene id CI01000004_06074774_06078306
gene name RNF2.L, RNF2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6074669 ~ 6079254 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06074774_06078306.mRNA
AGTTTTCTGACTCAAAAATACCACATTTCCCAGAGTTCATTTGGGCCCACTGAATCCGCCATATTGAGCTTAGCAGAACGCGCTGGCAGGAGAGAGAGTGTTCACAACATTGAAATGTAAGTATGTAAACAGCTCCGTTTTAACAGAAATATTTTTTTCCTAGTTGTCGATATTGACGTTTTTATTAGGGCAAAGGGTTTTATATGTCACAATCTCGCCGACACTGAGTTCAAAGTTGATTTAATGGAGCTTGTGAATACAGCATCTGGATTAGCAGAGAGAGTTAGCCGTTAGCTCTACGTTTTCATGACAGCGCAGGAGATAAAACCTTTCCGCCTTATTTTTTTCTCTTCCGTTTATTTTGTTTTGTTTTTGTTCTATCCGTTGCTGGAGAGCAGGCACAGTCATTCTAAAGACACTTTGTACGTACAGGAAGATGCTTTGTCTATTCGGTGACACAAAGAGTTATAAGTGCCTTCAGAAGCTAATTTTAGCCTGCTAGCTCTGTGACTGCAGGGTTAGACAGATTAATGGTTTATTATAGTATGAAGATCTAAAACAAAACAAAAAACTGCAGAGTTGATGATGGAAGTAAACATGAGTAGAGTTTAACGGACGTAATCACGCGCCAGCTTTCGGGTTAAACCAACGTCATCAGACCATAACATCCCTCAGATGTCAGTTGTCAGAGATGATAATGATGAAAAAAACGACTTTGCTGTCCTTGTCCTAAAATGATGTTTGAAAATTGTTAGATCATTGTCTTAAAGAGGTTTTTAGTAAGTCCTAAATATTTGTGTATGAATTTTGACATAAAACATGCTATTATTGTTTTGTTTTGATTCTGTATCTCATCGCATCATGTAGTAGATTTTCATATTATTTTCTGCACATCATCATGTCAGTAATGTTCTCTTCACAGAGGTGAAGGAGACACAGTATATAAATATGACACAGACGGTCCAGACGAATGGGGTTCAACCCCTCAGCAAGACATGGGAGCTTAGTCTCTATGAATTACAGAGAACTCCACAGGAGGCCATCACGGATGGTCTGGAGATCGCTGTGTCCCCACGCAGCTTACACAGTGAGCTTATGTGTCCTATCTGTCTGGACATGCTGAAGAACACCATGACCACCAAGGAGTGCCTGCACCGCTTCTGTGCCGACTGCATCATCACTGCACTCAGATCGGGGAATAAGGAGTGTCCAACATGCAGGAAGAAGCTGGTGTCTAAGCGCTCCCTCCGTCCAGACCCCAACTTTGACGCCTTGATCAGTAAGATCTACCCCAGCAGAGACGAGTACGAAGCCCACCAGGAGAGAGTGTTGGCCCGCATCAGCAAGCACAACAACCAGCAGGCGCTCAGCCATAGTATTGAAGAGGGCCTAAAAATCCAGGCCATGAACAGACTGCAGCGGGGGAAGAAGCACCAGATAGAAAATGGCAGCGGGGCGGAGGACAATGGGGACAGCTCACACTGCAGCAATGCATCAGTGCACAGTAACCAAGAGGCCGGGCCCAGCATCAAACGAACCAAAACTTCTGACGACTCGGGACTGGATATGGACAATGCCACCGAAAACGGAGGAGGAGACCTGGCACTGGACGGGGCCAGCGAGATTGAGCTGGTGTTCCGCCCTCACCCAACGCTGATGGAGAAAGAAGACGCCGCACAGACAAGTCTGAACTTGAATGTGGAATTTGTTACCAGGTACATTAAAACTTCGGGGAACGCCACAGTGGACCACCTCTCCAAATACTTGGCCGTCAGATTGGCTTTGGAGGAAATGCGCAAGAACGGAGAAGGAAGCCCTATCAATGTAGAGGCAGCCAGTGAAAAACAGTACACCATCTACATCCCTACAGCGAACAACCAGTTCACAGTCCTGAACGGCTCCTTCTCCCTGGAGCTGGTGAGCGAGAAGTACTGGAAAGTCAACAAGCCCATGGAGTTGTACTTCGCCCCAACAAAGGAGCACAAATGAATCCTGTGAGACACGAGGGTCCAAGCTGACCCGGGACAGACTGATGGTTCATCCTCTCTTCTCTCTTTCTTTTTTTTTTCTCTGTTCCTCCTCATCTGGAGTAAA

Function

symbol description
rnf2 Predicted to enable chromatin binding activity and ubiquitin protein ligase activity. Acts upstream of or within several processes, including animal organ morphogenesis; negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; and pectoral fin development. Predicted to be located in nuclear body. Predicted to be part of MLL1 complex and PRC1 complex. Is expressed in brain; eye; gonad; muscle; and pectoral fin. Orthologous to human RNF2 (ring finger protein 2).

GO:

id name namespace
GO:0035518 histone H2A monoubiquitination biological_process

KEGG:

id description
K10695 RNF1_2; E3 ubiquitin-protein ligase RNF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06074774_06078306.mRNA True 2094 mRNA 0.46 6 6074669 6079254

Neighbor

gene id symbol gene type direction distance location
CI01000004_06016711_06021356 PTGS2, PTGS2A coding downstream 53313 6016382 ~ 6021356 (-)
CI01000004_05976527_05978831 PDCA coding downstream 94915 5975404 ~ 5979754 (-)
CI01000004_05942638_05967553 TPRA coding downstream 107116 5942604 ~ 5967553 (-)
CI01000004_05902667_05905718 NA coding downstream 167817 5902655 ~ 5906852 (-)
CI01000004_05843593_05862033 NA coding downstream 212125 5843506 ~ 5862544 (-)
CI01000004_06121326_06137773 NA coding upstream 42032 6121286 ~ 6137773 (-)
CI01000004_06183916_06192361 MFSD12A coding upstream 103876 6183130 ~ 6193478 (-)
CI01000004_06200669_06208703 CSNK1G2, CSNK1G2A coding upstream 120492 6199746 ~ 6208703 (-)
CI01000004_06221889_06232315 MKNK2, MKNK2A coding upstream 141544 6220798 ~ 6232315 (-)
CI01000004_06308316_06314451 AMOTL2B coding upstream 229012 6308266 ~ 6315005 (-)
G29172 NA non-coding downstream 29362 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 105540 5968478 ~ 5969129 (-)
G29132 NA non-coding downstream 231372 5839522 ~ 5843297 (-)
G29130 NA non-coding downstream 236367 5838097 ~ 5838302 (-)
G29129 NA non-coding downstream 237764 5836647 ~ 5836905 (-)
G29233 NA non-coding upstream 96442 6175696 ~ 6175900 (-)
G29208 NA non-coding upstream 206223 6285477 ~ 6298068 (-)
G29188 NA non-coding upstream 320385 6399639 ~ 6403721 (-)
G29385 NA non-coding upstream 548320 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 548722 6627976 ~ 6628269 (-)
CI01000004_05617072_05627369 NA other downstream 447155 5616644 ~ 5628289 (-)
G27746 NA other downstream 870945 5178227 ~ 5203724 (-)
G26788 NA other downstream 2798948 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4299728 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 455573 6538904 ~ 6541252 (-)
G29388 NA other upstream 552039 6631293 ~ 6631907 (-)
G29656 NA other upstream 1885110 7964364 ~ 7965500 (-)
G29746 NA other upstream 2275244 8354498 ~ 8358127 (-)
G30316 NA other upstream 3298683 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015417 rnf2 coding NC_007113.7 CM002886.2 23351454 ~ 23361933 (+)
bowfin (Amia calva) AMCG00005079 rnf2,LOC107677769,LOC107718134,LOC107693737 coding CM030140.1 CM030140.1 14800105 ~ 14805904 (+)